Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq40156 641 4e-179 seq5990 603 1e-167 seq9596 188 8e-43 seq5685 140 4e-28 seq2250 93.3 5e-14 seq13284 91.5 2e-13 seq13182 87.8 2e-12 seq4685 82.4 8e-11 >seq40156 Length=57058 Score = 641 bits (710), Expect = 4e-179 Identities = 752/1014 (74%), Gaps = 2/1014 (0%) Strand=Plus/Plus Query 152359 TTTGATGTCCTGGATGACTGGCTTAAGAGAGACCGTTTCGTTTTTGTTGGTTGGTCTGGA 152418 |||||| | ||||||||||| | ||| ||||||||||||||||| |||||||| || Sbjct 5366 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 5425 Query 152419 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 152478 || | || ||||| ||||||| | || | || |||||| |||| || || || || Sbjct 5426 CTATTGCTCTTTCCTTGTGCTTATTTCGCGTTAGGAGGTTGGTTTACAGGTACAACCTTT 5485 Query 152479 GCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTT 152538 | || |||||||| || || ||||| ||||||||| |||| ||| ||||| | Sbjct 5486 GTAACTTCATGGTATACACATGGATTGGCGAGTTCCTATTTGGAAGGCTGCAACTTCTTA 5545 Query 152539 ACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGT 152598 || ||||||||||||||||| || || | | | || ||| | || | || |||||| Sbjct 5546 ACCGCGGCAGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGGT 5605 Query 152599 CCTGAGGCTCAAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTTTGTG 152658 || || || ||||| ||||| | ||| ||| | || || || ||| ||||||| Sbjct 5606 CCAGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTT 5665 Query 152659 GCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTGGCACG- 152717 || |||||||| ||||||| ||||| ||||||||| | || || |||||||| || || Sbjct 5666 GCTCTCCACGGCGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGA 5725 Query 152718 TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGT 152777 ||| || | | || || || ||||| || || ||||||| ||| || ||||||||||| Sbjct 5726 TCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGT 5784 Query 152778 TAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGG 152837 | || || || || || || || ||||| || ||||||| || || || ||| || Sbjct 5785 TTCTGTATTCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGG 5844 Query 152838 GGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGACATTGAA 152897 |||||||| || || |||||| | ||||| | ||||| || || || ||||||||||| Sbjct 5845 TGTCGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 5904 Query 152898 TCCGTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCATTCA 152957 || |||||||||||||| ||||| ||| | ||||| | ||| | || | || ||||| Sbjct 5905 CCCATTTCATATGATGGGGGTTGCGGGTGTATTGGGCGCTGCCCTTCTATGCGCTATTCA 5964 Query 152958 TGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACTTTCAAAGC 153017 ||||| ||| ||||| |||||||| | | |||||||||| ||||| || ||| || Sbjct 5965 TGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCCGTGC 6024 Query 153018 TTTCGACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTC 153077 ||| || ||||||| ||||| || ||||| ||||| || |||||||| || ||||| Sbjct 6025 TTTTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 6084 Query 153078 CCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGT 153137 ||| || ||||| |||||||| ||||||||| ||| | |||||||||||| | ||||| Sbjct 6085 CCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 6144 Query 153138 ACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCG 153197 ||| || | ||| | |||| | || ||||| | | || | ||||| || || || Sbjct 6145 ACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCTTGGCTCTGAACCTACG 6204 Query 153198 TGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTT 153257 || || || || || ||||| |||||| | || | ||||||||||||||||||||||| Sbjct 6205 CGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTT 6264 Query 153258 CTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCTGTTGACCA 153317 ||| || || ||||| ||||| || ||||| ||||||||||| |||| || || || Sbjct 6265 CTACACCAAAAATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCA 6324 Query 153318 ACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAACGCTCT 153371 |||||||| ||| | | |||||||| ||||| | || || || |||||||| Sbjct 6325 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 6378 >seq5990 Length=34798 Score = 603 bits (668), Expect = 1e-167 Identities = 730/991 (74%), Gaps = 2/991 (0%) Strand=Plus/Plus Query 150837 ACTTTTGTGACTGGGTTACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTGC 150896 |||| ||| | ||| | ||| | | | |||| ||| || | || ||||| ||||| Sbjct 10011 ACTTCTGTAAATGGATAACCAGCATTGAAAACCATCTTTACATTGGATGGTTTGGTGTTT 10070 Query 150897 TGATGATTCCAACTCTGTTGGCAGCAACCATTTGCTTCATCGTGGCATTCATCGCTGCTC 150956 ||||||| || || | ||| | ||||| | || || | || ||||| ||| ||| Sbjct 10071 TGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGCTTTCATTGCTACTC 10130 Query 150957 CCCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAACA 151016 | || ||||| || ||||| || |||||||| ||| |||| ||||| | ||||| || | Sbjct 10131 CTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAATA 10190 Query 151017 ACATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCCA 151076 | || || |||||||| || ||||| ||||| ||||| ||| | ||||| || || | Sbjct 10191 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTTCACTTTTACCCAA 10250 Query 151077 TCTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTG 151136 | |||||||| | || | ||||||||| | ||||| || ||||||| | || ||| Sbjct 10251 TATGGGAAGCTGTTTCCGTTGATGAATGGTTATACAATGGCGGTCCTTATAAGCTAATTG 10310 Query 151137 TCTTCCACTTCCTGATTGGTATCTATGCTTACATGGGTCGTGAGTGGGAACTGTCTTACC 151196 | | |||||| | ||||| | | ||| ||||||| |||||||||||| || || Sbjct 10311 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGAGTGGGAACTTAGTTTCC 10370 Query 151197 GCTTGGGTATGCGTCCCTGGATCTGC-GTTGCATACTCTGCTCCAGTTGCTGCTGCGAGT 151255 | | |||||||| || ||||| ||| |||||||| || ||||||||||||| ||| | | Sbjct 10371 GTCTAGGTATGCGCCCTTGGAT-TGCTGTTGCATATTCAGCTCCAGTTGCTGATGCAACT 10429 Query 151256 GCAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCCCTGGGT 151315 || || ||| | | ||||| | |||||||| || ||||| | ||||| || || Sbjct 10430 GCTGTTTTCTTGATATATCCCATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGA 10489 Query 151316 ATTTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCAC 151375 |||||||| || ||||||| |||| |||| ||||| || ||||||||||| || |||||| Sbjct 10490 ATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCAC 10549 Query 151376 CCCTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTCTCGGCAATGCAC 151435 || || || ||| | ||||| |||||||| |||| || || || ||| || ||||| Sbjct 10550 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGACGGTTCCCTATTCAGTGCTATGCAT 10609 Query 151436 GGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAACGAGTCCCAGAACTAT 151495 |||| |||| |||||| || | | || ||||| ||||| || || ||| | Sbjct 10610 GGTTGCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAA 10669 Query 151496 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCACACGGTTACTTT 151555 ||||||| ||||||||||| ||||| || || || ||||| || || || ||||| ||| Sbjct 10670 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 10729 Query 151556 GGTCGTCTCATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTC 151615 || || | || |||||||| ||| ||||||||||| ||||| | || |||||||| Sbjct 10730 GGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTA 10789 Query 151616 GCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCATTC 151675 || || |||||||| || ||||||||||||||||| | ||| ||||||| ||||| ||| Sbjct 10790 GCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 10849 Query 151676 AACCTGAACGGTTTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAAC 151735 ||| | || |||||||| |||||||| || | | ||| |||| || | || | || Sbjct 10850 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCATGTAATTAAT 10909 Query 151736 ACCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAAT 151795 |||||||| | || | || ||||| || ||||||||||||||||| || |||||| Sbjct 10910 ACCTGGGCTAATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 10969 Query 151796 GCTCACAACTTCCCTCTCGACCTTGCTGCTG 151826 ||||| || |||||||| ||| | ||| ||| Sbjct 10970 GCTCATAATTTCCCTCTAGACTTAGCTTCTG 11000 >seq9596 Length=34882 Score = 188 bits (208), Expect = 8e-43 Identities = 212/281 (75%), Gaps = 2/281 (1%) Strand=Plus/Plus Query 153092 TTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATGGGTC 153151 |||||||| ||||||||| ||| | |||||||||||| | |||||||| || | ||| Sbjct 5359 TTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTT 5418 Query 153152 TTTGGACCTCTTCTATTGGAATCATTGGTCTT-GCTCTCAATCTTCGTGCTTACGATTTT 153210 | |||| | || ||||| | | | | ||| ||||| || || || || || || || Sbjct 5419 TATGGATGAGTGCTCTTGGAGT-AGTCGACTTGGCTCTGAACCTACGCGCCTATGACTTC 5477 Query 153211 GTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAAT 153270 || ||||| |||||| | || | |||||||||||||||||||||||||| || || ||| Sbjct 5478 GTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCAAAAAT 5537 Query 153271 ATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCTGTTGACCAACCTCATGAGAAC 153330 || ||||| || ||||| ||||||||||| |||| || || || |||||||| ||| Sbjct 5538 ATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAAC 5597 Query 153331 TTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAACGCTCT 153371 | | |||||||| ||||| | || || || ||| |||| Sbjct 5598 CTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACACTCT 5638 >seq5685 Length=160749 Score = 140 bits (154), Expect = 4e-28 Identities = 173/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 151590 ATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTG 151649 |||| ||||| | || |||||||| || |||||| | || ||||| |||||||| | Sbjct 78493 ATTCTCGTTCTTTACATTTCTTCCTTATGGCTTGGCCTATAGTAGGTATTTGGTTCACCG 78552 Query 151650 CACTTGGTGTCAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCA 151709 | | ||| ||| ||| ||||| |||||| | || |||||||| |||||||| ||| | Sbjct 78553 CTTTAGGTATCAACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAG 78612 Query 151710 TGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTCTGG 151769 | ||| |||| || || | || |||| || || || | || ||||| || | Sbjct 78613 TTGATAGTCAAGGTTGTGTAATTAATACCTAGGTTGATATTATTAATCGTGCTAACCTTG 78672 Query 151770 GTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCTG 151826 ||| ||||||||||| || ||||||||||| || |||||||| ||| | ||| ||| Sbjct 78673 GTACGGAAGTTATGCGTGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 78729 >seq2250 Length=25732 Score = 93.3 bits (102), Expect = 5e-14 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 153208 TTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAG 153267 ||||| ||||||||||| | || ||||||||||| |||||||||||||||| || || Sbjct 5402 TTTGTTTCTCAAGAAATTCGTGCAGCAGAAGATCCTAAATTTGAGACGTTCTACACCAAA 5461 Query 153268 AATATCCTTTTGAACGAAGGTCTTCGTGCTT 153298 ||||| ||||| || ||||| || |||||| Sbjct 5462 AATATTCTTTTAAATGAAGGCATTAGTGCTT 5492 >seq13284 Length=8732 Score = 91.5 bits (100), Expect = 2e-13 Identities = 174/250 (70%), Gaps = 11/250 (4%) Strand=Plus/Minus Query 152535 TCTTA-CTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCT 152593 ||||| | ||||||||||||||||| | || | | | || ||| | || | || | Sbjct 2579 TCTTAACCGCGGCAGTTTCTACTCCTACTAATAGTTTAGCACACTCTTTGTTGTTACTAT 2520 Query 152594 GGGGTCCTGAGGCTCAAGGGGATT----TCGTCAGATGGATTCAGCTCGGAGGACTCTGG 152649 ||||||| | || |||| ||| |||| || || ||| | || | || ||| Sbjct 2519 GGGGTCCAAAAGCATAAGGAGATCGTACTCGTTAG-TG---TCAATTAGGCAGTCTGTGG 2464 Query 152650 GCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAA 152709 ||||||| || ||||| | |||||| ||||| ||||||||| | || || |||||| Sbjct 2463 ACTTTTGTTGCTCTCCATGACGCTTTCAAACTAATAGGTTTCATGTTACGTCAATTTGAA 2404 Query 152710 CTGGCACG-TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGC 152768 || || | ||| || | | || || || ||||| || || |||| || ||| || || Sbjct 2403 CTTGCTCAATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTTTGCTCCAATTGC 2345 Query 152769 TGTTTTTGTT 152778 |||||||||| Sbjct 2344 TGTTTTTGTT 2335 >seq13182 Length=14344 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/150 (73%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 153201 TTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTA 153260 ||| || ||||| ||| | |||||| || | |||||||||||||||||||| |||||| Sbjct 7670 TTATGACTTTGTTTCTTAGGAAATCCATGCATTAGAAGATCCTGAATTTGAGATGTTCTA 7611 Query 153261 TACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCTGTTGACCAACC 153320 || || ||||| ||| || |||||| || ||||||| ||||| || || | | Sbjct 7610 CACCAAAAATAT-TATTTAAATGAAGGTATTTGTGCTTGTATGGCAACTCAAGATTAGCT 7552 Query 153321 TCATGAGAACTTCGTGTTCCCTGAAGAGGT 153350 |||| | || | | |||| ||| ||||| Sbjct 7551 TCATAAAAAACTTATATTCCTTGAGGAGGT 7522 >seq4685 Length=19895 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 151280 GGTCAAGGTTCTTTCTCTGATGCAATGCCCCTGGGTATTTCTGGCACATTCAACTACATG 151339 ||||||| ||| ||| ||| ||||| || || |||||||| || ||||||| | || Sbjct 6887 GGTCAAGAAAGTTTTTCTAATGGTATGCCTCTTGGAATTTCTGGTACTTTCAACTTCGTG 6828 Query 151340 CTTGTCTTCCAAGCAGAGCACAACATTCTGATGCACCCCTTCCATATG 151387 |||| ||||| | ||||||||||| || |||||||| || || ||| Sbjct 6827 ATTGTATTCCAGGTTGAGCACAACATCCTTATGCACCCATTTCACATG 6780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549346517036320