Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq5990 479 3e-130 seq40156 358 8e-94 seq6232 116 4e-21 seq3690 86.0 7e-12 seq2753 84.2 3e-11 >seq5990 Length=34798 Score = 479 bits (530), Expect = 3e-130 Identities = 706/993 (71%), Gaps = 10/993 (1%) Strand=Plus/Plus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 || ||| | ||| |||| || ||| || | | ||| |||| ||||||||||| || Sbjct 10013 TTCTGTAAATGGATAACCAGCATTGAAAACCATCTTTACATTGGATGGTTTGGTGTTTTG 10072 Query 72295 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 72353 |||||||| | ||| | || || || || || ||| | || ||||| ||| |||| Sbjct 10073 ATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTATTGCTTTCATTGCTACTCC 10131 Query 72354 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAA 72413 |||||| ||||| || || || | ||||| ||| | || ||| | | || || || || Sbjct 10132 TCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAATAA 10191 Query 72414 CATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 72473 || || |||||||| | |||| |||| || ||||| || ||||| || || || Sbjct 10192 TATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTTCACTTTTACCCAAT 10251 Query 72474 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTAT 72533 |||||||| | | | || || ||||| || || || |||||||| || || || | Sbjct 10252 ATGGGAAGCTGTTTCCGTTGATGAATGGTTATACAATGGCGGTCCTTATAAGCTAATTGT 10311 Query 72534 TTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAG 72593 | | |||||| | |||| | || || |||||| |||||||||| | | | Sbjct 10312 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGAGTGGGAACTTAGTTTCCG 10371 Query 72594 ACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGC 72653 ||||| ||| | |||||||| ||| ||||| ||||| || || ||| ||| ||| Sbjct 10372 TCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGATGCAACTGC 10431 Query 72654 AGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 72713 || ||| | | ||||| | ||||| || || ||||| |||||||| ||||| || Sbjct 10432 TGTTTTCTTGATATATCCCATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAAT 10491 Query 72714 CTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCC 72773 || ||||| |||||||||||| | || ||||| || || |||||||| || |||||||| Sbjct 10492 TTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 10551 Query 72774 CTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGG 72833 || || ||| ||||||||| ||| | |||| ||| || |||||||| ||||| || Sbjct 10552 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGACGGTTCCCTATTCAGTGCTATGCATGG 10611 Query 72834 TTCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGG 72893 || | || ||||| | | ||||| || || ||||| || || | ||| | || Sbjct 10612 TTGCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGG 10671 Query 72894 CTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGG 72953 || | ||||| ||||| |||||||| ||||| || || ||||||||||| || || || Sbjct 10672 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGG 10731 Query 72954 TAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGC 73013 |||| || ||||| ||||| |||||||| |||||||| ||||| |||||||| || Sbjct 10732 CCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGC 10791 Query 73014 TGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAA 73073 | | |||||||| || | ||||| || | | |||||| | || ||||| ||||| Sbjct 10792 GGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAA 10851 Query 73074 CCTTAACGGATTCAACTTCAACCAATCAGTTGTAGAT-GCAAACGGAAAG--ATT-GTAC 73129 | | || || ||||| ||||||||||| || || ||| | || | | | ||| ||| Sbjct 10852 CTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCATGTAATTAATAC 10911 Query 73130 CAACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAA 73189 | |||| || || |||| | || |||||||| |||||||||||||||||| | | Sbjct 10912 C----TGGGCTAATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 10967 Query 73190 ATGCACACAACTTCCCACTAGACCTAGCATCTG 73222 |||| || || ||||| |||||| |||| |||| Sbjct 10968 ATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 11000 >seq40156 Length=57058 Score = 358 bits (396), Expect = 8e-94 Identities = 702/1038 (68%), Gaps = 21/1038 (2%) Strand=Plus/Plus Query 73364 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 73423 ||||| || | ||||| |||||| ||| || |||||||| || | || ||||| ||| Sbjct 5366 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 5425 Query 73424 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 73483 || || || || ||||||||||| | || | ||||||||||| ||| || || || Sbjct 5426 CTATTGCTCTTTCCTTGTGCTTATTTCGCGTTAGGAGGTTGGTTTACAGGTACAACCTTT 5485 Query 73484 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTA 73543 || || |||||||| |||||||| | || || ||| | || || || || ||| Sbjct 5486 GTAACTTCATGGTATACACATGGATTGGCGAGTTCCTATTTGGAAGGCTGCAACTTCTTA 5545 Query 73544 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGA 73603 || || ||||| || || |||| | || | | | || | | ||||| || ||||| Sbjct 5546 ACCGCGGCAGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGGT 5605 Query 73604 CCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 73663 ||||| |||||||||||| || || |||| ||||||||| || || |||| ||||| Sbjct 5606 CCAGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTT 5665 Query 73664 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGA 73723 || | || || | || ||||| |||||||||||| | | || ||||| |||| || Sbjct 5666 GCTCTCCACGGCGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGA 5725 Query 73724 CTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTCACG 73783 |||| | || ||||| || ||| | || || || || || || || || Sbjct 5726 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTT 5785 Query 73784 AGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGGT 73843 | || || || ||||| |||| ||| | |||||||||| || || || ||| Sbjct 5786 TCTGTATTCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGT 5845 Query 73844 GTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAAT 73903 |||||||| || ||||| | || | || | || || || || ||| || | || Sbjct 5846 GTCGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAAC 5905 Query 73904 CCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACAT 73963 ||||||||||||||||| || || ||| || | || | || | ||||| || || ||| Sbjct 5906 CCATTTCATATGATGGGGGTTGCGGGTGTATTGGGCGCTGCCCTTCTATGCGCTATTCAT 5965 Query 73964 GGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATT 74023 ||||| || ||| | || || || | |||||| || | | | Sbjct 5966 GGTGCTACCGTAGAAAATACTTTATTTGAAGA---------------TG--GTGATGGCG 6008 Query 74024 CAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTATAGTATGATT 74083 ||| |||| ||| | || || | || || || | ||||| |||||| ||| | Sbjct 6009 CAA-ATACA---TTCCGTGCTTTTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTC 6064 Query 74084 ACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTA 74143 || |||||| | || ||||| || || ||||| | || ||||| || ||| | | ||| Sbjct 6065 ACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 6124 Query 74144 CACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 74203 || ||| ||||||| || ||||| || | ||| | |||| || | || | || Sbjct 6125 CATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTC 6184 Query 74204 GGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 74263 || | || || ||||| | || || ||||| || ||||| || || | ||||| ||| Sbjct 6185 GGCTTGGCTCTGAACCTACGCGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAA 6244 Query 74264 GACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCA 74323 || || || ||||| || |||||||| || || |||||| | |||||||| || | || Sbjct 6245 GATCCTGAATTTGAGACGTTCTACACCAAAAATATTCTTTTAAATGAAGGCATTCGTGCT 6304 Query 74324 TGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCA 74383 |||||| | || ||||| || ||||| ||| || | ||||| || || || | || Sbjct 6305 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCC 6364 Query 74384 CGAGGCAACGCACTATAA 74401 || || ||||| || ||| Sbjct 6365 CGTGGAAACGCTCTTTAA 6382 >seq6232 Length=104065 Score = 116 bits (128), Expect = 4e-21 Identities = 206/298 (69%), Gaps = 2/298 (1%) Strand=Plus/Minus Query 72255 CACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTA-A 72313 |||||| || || | ||| |||| |||||||| || || |||||||| | ||| | | Sbjct 82874 CACTGAAAACCGTCTTTACATTGGATGGTTTGGCGTTTTGATGATCCC-TACCTTATTGA 82816 Query 72314 CTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAA 72373 | | || || || ||| | || ||||| ||||||||||| || ||||| || || | Sbjct 82815 CCGTAACTTCTGTATTTATTATTGCTTTCATTGCTGCTCCTCCGGTGGATATTGATGGTA 82756 Query 72374 TCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAG 72433 | | ||||| ||| | || ||| | | || || || || || || |||||||| | Sbjct 82755 TTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAATAATATTATTTCTGGTGCCATTA 82696 Query 72434 TTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGG 72493 |||| |||| || ||||| || ||||| || || || |||||||| | | | | Sbjct 82695 TTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGCTGGTTCCGTTG 82636 Query 72494 ACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGG 72551 | || ||||| || || | |||||||| || || || || | |||||| | |||| Sbjct 82635 ATGAATGGTTATACAATGATGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG 82578 >seq3690 Length=176667 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 73135 TGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCA 73194 |||| ||| || ||||| || |||||||| |||||||||||||||||| | ||||| Sbjct 116815 TGGGCTGATATTATTAACCATGCTAACCTTGGTATGGAAGTTATGCATGAATGTAATGCT 116756 Query 73195 CACAACTTCCCACTAGACCTAGCATCTGCTGA 73226 || || ||||| |||||| |||| |||| ||| Sbjct 116755 CATAATTTCCCTCTAGACTTAGCTTCTGTTGA 116724 >seq2753 Length=60576 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 73141 GATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAAC 73200 ||| || ||||| || |||||||| |||||||||||||||||| | ||||| || || Sbjct 53403 GATATTATTAACCATGCTAACCTTGGTATGGAAGTTATGCATGAATGTAATGCTCATAAT 53344 Query 73201 TTCCCACTAGACCTAGCATCTGCTGA 73226 ||||| |||||| |||| |||| ||| Sbjct 53343 TTCCCTCTAGACTTAGCTTCTGTTGA 53318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572586046096480