Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq12080 217 2e-50 seq2443 87.8 2e-11 seq2694 86.0 8e-11 >seq12080 Length=19512 Score = 217 bits (240), Expect = 2e-50 Identities = 226/294 (77%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||| || ||||||||||| || || || | |||| | || ||| Sbjct 8244 GAGTGGATGTTCTCGATCGCAATCTGGAAGCCATAGAAAGCGCGAGCCTCCGAAACCTGG 8185 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||||| || ||||| ||||| |||||||||||| ||||||||| Sbjct 8184 ACCTCCTTCATGAACCTCCCCGCCAGATTCTCCAAAACGATGCCGTCGGAGGCGGCGAAG 8125 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || ||||| |||| ||||| | |||||| ||| | || ||||||| ||| Sbjct 8124 AAGGCGAGCACGTGAGTGATGAAGTGCCTCTCGTCATCGGTTAGGTTTTCCCAGTG-ACG 8066 Query 869813 GT-GTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 |||| || ||| || ||||||||||||||||||| ||||||||||||||| ||||| Sbjct 8065 TACGTCGCCGGAGAGATCGACCTCCTCGGCGGTCCAGAACGAGGCCTCGGCCTTCTTGTA 8006 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 ||||||||||| | | |||| | || || || | | || |||| ||||| Sbjct 8005 CATCTCCCATATCTCCGGGTACTGAATTGGAAACATGCAGAACCGGTCCGGGTT 7952 >seq2443 Length=192057 Score = 87.8 bits (96), Expect = 2e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 869815 GTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACAT 869874 |||| || ||| || ||||||||||||||| ||| ||||||||||||||| |||||||| Sbjct 92197 GTCGCCGGAGAGATCGACCTCCTCGGCGGTCTAGAACGAGGCCTCGGCCTTCTTGTACAT 92138 Query 869875 CTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 |||||| | | | |||| | || ||||| | | || |||| ||||| Sbjct 92137 CTCCCAGATCTCCGGGTACTGAATCGGGAACATGTAGAACCGGTCCGGGTT 92087 >seq2694 Length=194030 Score = 86.0 bits (94), Expect = 8e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 869824 GAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATAC 869883 ||| || ||||||||||||||||||| |||||| |||||||| |||||||||||||| | Sbjct 145693 GAGATCGACCTCCTCGGCGGTCCAGAACGAGGCATCGGCCTTCTTGTACATCTCCCAGAT 145752 Query 869884 TTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 | | |||| | || ||||| | | || |||| ||||| Sbjct 145753 CTCCAGGTACTGAATCGGGAACATGCAGAACCGGTCCGGGTT 145794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6103843810589452