Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq762 104 2e-17 seq2332 89.7 4e-13 seq2326 89.7 4e-13 seq6121 84.2 2e-11 >seq762 Length=331234 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| ||||| || || || |||||||||||||| || | || ||| Sbjct 300694 AATGCAAATTTTTGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTTGAGAGCTC 300753 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| | | | || ||| ||||| |||||||| || | || ||| || Sbjct 300754 TGATACTATTGATAATGTCAAAGCTAAGATCCAAGACAAAGAGGGTATCCCACCGGACCA 300813 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| || || |||| ||| || || ||| |||| |||| || || | || |||||||| Sbjct 300814 ACAGAGGCTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGACCTTAGCTGATTACAA 300873 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||||| || || || ||||| ||||| | || |||| || |||| Sbjct 300874 CATTCAAAAGGAGTCAACCCTGCACTTGGTGCTGCGATTGCGTGGAGGAA 300923 >seq2332 Length=86198 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || | ||||| || |||||||| | ||| ||| | Sbjct 74003 ATGCAGATTTTCGTCAAGACACTCACCGGAAAGACCATTACTCTTGAAGTTGAGAGTTCT 74062 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || || || ||| ||||||||||| | ||| ||||| Sbjct 74063 GATACAATAGATAATGTGAAGGCTAAAATTCAGGACAAAGAAGGAATTCCCCCAGATCAG 74122 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || |||| || || || ||||| ||||||| | |||| |||| ||||||||| Sbjct 74123 CAGAGGCTGATTTTCGCTGGAAAGCAGCTTGAGGATGGCCGAACTTTGGCCGATTACAAC 74182 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||| || |||||||| Sbjct 74183 ATTCAGAAGGAATCTAC 74199 >seq2326 Length=95029 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || | ||||| || |||||||| | ||| ||| | Sbjct 84558 ATGCAGATTTTCGTCAAGACACTCACCGGAAAGACCATTACTCTTGAAGTTGAGAGTTCT 84617 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || || || ||| ||||||||||| | ||| ||||| Sbjct 84618 GATACAATAGATAATGTGAAGGCTAAAATTCAGGACAAAGAAGGAATTCCCCCAGATCAG 84677 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || |||| || || || ||||| ||||||| | |||| |||| ||||||||| Sbjct 84678 CAGAGGCTGATTTTCGCTGGAAAGCAGCTTGAGGATGGCCGAACTTTGGCCGATTACAAC 84737 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||| || |||||||| Sbjct 84738 ATTCAGAAGGAATCTAC 84754 >seq6121 Length=68638 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||| ||||| | ||| ||| ||||| || || |||| ||| ||||| || |||| Sbjct 2959 GACAAGGAAGGTATCCCCCCGGACCAACAGAGGCTGATTTTTGCTGGTAAGCAATTGGAA 3018 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| |||| | || ||||||||||| ||||| || || || | ||| |||| || Sbjct 3019 GATGGTCGAACTCTTGCTGATTACAACATCCAAAAGGAGTCGACACTTCACCTGGTTTTG 3078 Query 110486 AGACTGCGAGGGGGAA 110501 ||||| || || |||| Sbjct 3079 AGACTTCGGGGAGGAA 3094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412639554804908