Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq12080 183 5e-40 seq2443 89.7 8e-12 seq6785 87.8 3e-11 seq3275 87.8 3e-11 seq2694 87.8 3e-11 >seq12080 Length=19512 Score = 183 bits (202), Expect = 5e-40 Identities = 167/209 (80%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | || ||||||||||||||||| | || ||||| ||||| ||||||||| Sbjct 8199 GCCTCCGAAACCTGGACCTCCTTCATGAACCTCCCCGCCAGATTCTCCAAAACGATGCCG 8140 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||||||||| |||||||| ||||| |||| ||||| | |||||| ||| | || Sbjct 8139 TCGGAGGCGGCGAAGAAGGCGAGCACGTGAGTGATGAAGTGCCTCTCGTCATCGGTTAGG 8080 Query 796270 GAGACCCAGTGGACCGT--GTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGG 796327 ||||||| ||| |||| || ||| |||||||||||||||||||| || |||| Sbjct 8079 TTTTCCCAGTGA--CGTACGTCGCCGGAGAGATCGACCTCCTCGGCGGTCCAGAACGAGG 8022 Query 796328 CCTCGGCCTTTTTGTACATCTCCCATATC 796356 |||||||||| |||||||||||||||||| Sbjct 8021 CCTCGGCCTTCTTGTACATCTCCCATATC 7993 Score = 181 bits (200), Expect = 2e-39 Identities = 237/327 (72%), Gaps = 7/327 (2%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||||||||| || |||||| |||||| ||| | |||||||| | |||||||| Sbjct 8524 ACCTTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTTAACCCGGGCATTAACCCGCGCTT 8465 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 || |||||||| || || ||||| || || ||||| || ||||| |||||| || || Sbjct 8464 TTTTAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAAATGCCTTCGACGCAAGCGAA 8405 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | ||| ||||| ||| || || | || ||| || ||||||| || ||||| Sbjct 8404 GGCGATGAGCCTCTCCGCGAACGATTCTCCGCCGTC------GATCCACCGCAGGGCCCA 8351 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 ||| ||||| ||| ||| | || || || || || ||| | || || ||| |||||| Sbjct 8350 CTCGGCCTTCTTCGCCACGCAAGGAACGGTCTCCATCGCGTGGAACAGCCGGTTCTTCTC 8291 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 | ||| |||||||| ||||| |||| | ||| ||| | || ||||||||||| || Sbjct 8290 GGCCGAGTCCTTGATATAGGTCTCGAGCAAGAGACTGTACATTTCGGAGTGGATGTTCTC 8231 Query 794640 GATGGCGATCTGGAAGCCATA-AAAGC 794665 ||| || |||||||||||||| ||||| Sbjct 8230 GATCGCAATCTGGAAGCCATAGAAAGC 8204 >seq2443 Length=192057 Score = 89.7 bits (98), Expect = 8e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 796287 GTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACAT 796346 |||| || ||| |||||||||||||||||| | || |||||||||||||| |||||||| Sbjct 92197 GTCGCCGGAGAGATCGACCTCCTCGGCGGTCTAGAACGAGGCCTCGGCCTTCTTGTACAT 92138 Query 796347 CTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 |||||| ||| |||| | || ||||||| Sbjct 92137 CTCCCAGATCTCCGGGTACTGAATCGGGAACA 92106 >seq6785 Length=74528 Score = 87.8 bits (96), Expect = 3e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 || || ||||| | |||||||| ||| | |||||| ||| ||||||| || || Sbjct 45727 GCTGCAAACTATTTGAACATCAAGAGCCTTTTGGATTTGACATGCCAGACCGTAGCGGAC 45668 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAG 2035757 | |||||||| ||| | || ||||| |||||||||||||||||||||||| Sbjct 45667 ATGATCAAGGGTAAGACACCAGAGGAGATCCGCAAGACCTTTAACATCAAG 45617 >seq3275 Length=324694 Score = 87.8 bits (96), Expect = 3e-11 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 796296 GAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATAT 796355 ||| |||||||||||||||||||| || ||||| |||||||| |||||||||||||| || Sbjct 301466 GAGATCGACCTCCTCGGCGGTCCAGAACGAGGCATCGGCCTTCTTGTACATCTCCCAGAT 301525 Query 796356 CCGTTGGTAGCGGATGGGGAACA 796378 | |||| | || ||||||| Sbjct 301526 CTCCGGGTACTGAATCGGGAACA 301548 >seq2694 Length=194030 Score = 87.8 bits (96), Expect = 3e-11 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 796296 GAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATAT 796355 ||| |||||||||||||||||||| || ||||| |||||||| |||||||||||||| || Sbjct 145693 GAGATCGACCTCCTCGGCGGTCCAGAACGAGGCATCGGCCTTCTTGTACATCTCCCAGAT 145752 Query 796356 CCGTTGGTAGCGGATGGGGAACA 796378 | |||| | || ||||||| Sbjct 145753 CTCCAGGTACTGAATCGGGAACA 145775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7911974823128484