Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq762 107 2e-18 seq3733 91.5 1e-13 seq5335 86.0 5e-12 seq2332 82.4 6e-11 seq2326 82.4 6e-11 >seq762 Length=331234 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||||||||| || || || || ||||||||||| || | || ||| ||| Sbjct 300694 AATGCAAATTTTTGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTTGAGAGCTC 300753 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 |||||| | | | || ||| ||||| || ||||| || | || ||| | Sbjct 300754 T-GATACTATTGATAATGTCAAAGCTAAGATCCAAGACAAAGAGGGTATCCCACCGGACC 300812 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 | ||||| || |||| ||| || || ||| |||| || | | || | || || |||| Sbjct 300813 AACAGAGGCTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGACCTTAGCTGATTACA 300872 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 |||||||||||||||| || ||||| ||||| || ||||||| || |||| Sbjct 300873 ACATTCAAAAGGAGTCAACCCTGCACTTGGTGCTGCGATTGCGTGGAGGAA 300923 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||||||||| || || || || |||||||| ||||| | || ||| | Sbjct 317136 AATGCAAATTTTTGTTAAGACCTTGACTGGCAAAACAATTACTTTGGAGGTTGAGAGTTC 317195 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| ||| | || ||| ||||| || || || || | || ||| || Sbjct 317196 AGATACTATCGATAATGTTAAAGCTAAGATCCAAGACAAGGAGGGTATCCCACCGGACCA 317255 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||| || |||| ||| || || ||| |||| || | | || | || || ||||| Sbjct 317256 ACAGAGGCTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGACCTTAGCTGATTACAA 317315 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 |||||||||||||| || ||||| ||||| || | ||||| || |||| Sbjct 317316 TATTCAAAAGGAGTCAACCCTGCACTTGGTGCTGCGTTTGCGTGGTGGAA 317365 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| |||||||| || || || ||||| || |||||||| | || ||| | Sbjct 317592 AATGCAGATTTTTGTTAAGACCTTGACAGGGAAGACCATTACTTTGGAGGTTGAGAGTTC 317651 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || ||| ||||||| || || || || | ||| || || Sbjct 317652 TGATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGAATTCCCCCAGACCA 317711 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||||| ||| || |||||||| || || | | || |||| || ||||| Sbjct 317712 GCAGAGGCTTATTTTTGCAGGCAAACAGCTTGAAGATGGAAGGACTCTGGCTGATTACAA 317771 Query 107735 CATTCAAAAGGAGTCTACGTTGCAC 107759 || |||||||||||||| ||||| Sbjct 317772 TATCCAAAAGGAGTCTACTCTGCAC 317796 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| |||||||| || || || || || || ||||| ||| | || || | Sbjct 301150 AATGCAGATTTTTGTTAAGACCTTGACTGGGAAGACCATAACCCTGGAGGTTGAAAGTTC 301209 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || ||| ||||||| || || || || | || ||||| Sbjct 301210 TGATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGAATTCCTCCAGATCA 301269 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||||| ||| || |||||||| || || | | || |||| || ||||| Sbjct 301270 GCAGAGGCTTATTTTTGCAGGCAAACAGCTTGAAGATGGAAGGACCCTGGCTGATTACAA 301329 Query 107735 CATTCAAAAGGAGTCTACGTTGCAC 107759 || |||||||||||||| ||||| Sbjct 301330 TATCCAAAAGGAGTCTACTCTGCAC 301354 >seq3733 Length=159728 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GC 107611 || ||||| || || || ||||| |||| || |||||||| ||| | || |||| || Sbjct 63208 AAGATGCAGATCTTCGTGAAAACCCTAACCGGAAAAACCATCACCCTGGAGGTGGAGAGC 63149 Query 107612 TGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGA 107671 | ||| || | | | | || || ||||| || || |||||| | ||| ||| Sbjct 63148 TC-CGACACCATAGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGGA 63090 Query 107672 TCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTA 107731 |||||||| || || | || |||||||| ||||||||| || | || ||||| Sbjct 63089 CCAGCAGAGGCTCATCTTCGCCGGTAAACAATTGGAGGACGGTCGTACCCTCGCCGACTA 63030 Query 107732 CAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 |||||| || || ||||| ||| | ||| | |||||||| Sbjct 63029 CAACATCCAGAAAGAGTCAACGCTCCACCTCGTGTTGAG 62991 >seq5335 Length=19063 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| || || | || ||||| || ||||| |||| ||| ||| Sbjct 7971 AATGCAAATCTTTGTAAAGACCCTCACTGGCAAGACTATTACTCTCGAGGTTGAGAGCTC 7912 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||| | | | | || ||| ||| ||| ||||| ||||| | || ||| | Sbjct 7911 T-GATACAATTGACAACGTCAAAGCAAAAATTCAGGATAAGGAAGGTATTCCACCGGACC 7853 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 | ||||| ||||| | || || |||||||||||||| | || || |||| ||||| | Sbjct 7852 AACAGAGGCTTATATTCGCTGGAAAACAGCTGGAGGAGGGCAGGACTTTGGCTGACTATA 7793 Query 107734 ACATTCAAAAGGAGTCTAC 107752 | || || || |||||||| Sbjct 7792 ATATCCAGAAAGAGTCTAC 7774 >seq2332 Length=86198 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| || ||| | || ||||| || ||||| | || ||| ||| Sbjct 74458 AATGCAAATCTTTGTAAAGACTCTTACTGGCAAGACTATTACTCTTGAGGTCGAGAGCTC 74517 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 |||||| | | | | || || ||| ||| ||||||||||| | || || | Sbjct 74518 T-GATACTATTGACAATGTTAAGGCAAAAATTCAGGATAAAGAAGGTATTCCACCAGACC 74576 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 | ||||| || || | || || |||||||| || || | || || |||| ||||| | Sbjct 74577 AACAGAGGCTGATATTCGCTGGAAAACAGCTTGAAGATGGCAGGACTTTGGCTGACTATA 74636 Query 107734 ACATTCAAAAGGAGTCTAC 107752 ||||||| || |||||||| Sbjct 74637 ACATTCAGAAAGAGTCTAC 74655 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 |||||| |||||||| || ||| | || || || ||||| ||| | || |||| ||| Sbjct 74686 AATGCAGATTTTTGTTAAGACTCTGACTGGGAAGACCATCACCCTTGAGGTGGAGAGCTC 74745 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||| | | | || ||| ||||||| ||||| ||||| | || ||||| Sbjct 74746 T-GATACCATAGATAATGTTAAAGCAAAGATTCAAGATAAGGAAGGGATTCCTCCGGATC 74804 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || || | ||| || ||||| || ||||| | || |||| || |||| Sbjct 74805 AGCAGAGGCTCATCTTTGCTGGAAAACAACTTGAGGATGGTCGCACTCTGGCTGATTACA 74864 Query 107734 ACATTCAAAAGGAGTCTAC 107752 | ||||| ||||| || || Sbjct 74865 ATATTCAGAAGGAATCAAC 74883 >seq2326 Length=95029 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| || ||| | || ||||| || ||||| | || ||| ||| Sbjct 85013 AATGCAAATCTTTGTAAAGACTCTTACTGGCAAGACTATTACTCTTGAGGTTGAGAGCTC 85072 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 |||||| | | | | || || ||| ||| ||||||||||| | || || | Sbjct 85073 T-GATACTATTGACAATGTTAAGGCAAAAATTCAGGATAAAGAAGGTATTCCACCAGACC 85131 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 | ||||| || || | || || |||||||| || || | || || |||| ||||| | Sbjct 85132 AACAGAGGCTGATATTCGCTGGAAAACAGCTTGAAGATGGCAGGACTTTGGCTGACTATA 85191 Query 107734 ACATTCAAAAGGAGTCTAC 107752 ||||||| || |||||||| Sbjct 85192 ACATTCAGAAAGAGTCTAC 85210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398681589195484