Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq40156 93.3 2e-14 seq40154 93.3 2e-14 seq3427 80.6 1e-10 >seq40156 Length=57058 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| | Sbjct 9578 GTTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAG 9637 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 9638 CTGCTCTACCCCGC 9651 >seq40154 Length=1768 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| | Sbjct 130 GTTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAG 189 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 190 CTGCTCTACCCCGC 203 >seq3427 Length=94710 Score = 80.6 bits (88), Expect = 1e-10 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| ||||||||||||| | | |||| ||| ||||||||| |||||||||| | Sbjct 13139 GTTGCGGAGACGGGATTTGAACCTGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAG 13080 Query 50170 CTGCTCTAC 50178 |||||||| Sbjct 13079 TTGCTCTAC 13071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181516602060072