Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq40156 562 3e-155 seq5990 542 3e-149 seq9596 176 5e-39 seq5685 127 2e-24 seq4685 87.8 2e-12 seq13284 82.4 8e-11 seq2250 82.4 8e-11 >seq40156 Length=57058 Score = 562 bits (622), Expect = 3e-155 Identities = 737/1013 (73%), Gaps = 6/1013 (1%) Strand=Plus/Plus Query 158775 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 158834 ||||| || | || |||||| | |||| |||||||||||||| || ||||| || Sbjct 5366 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 5425 Query 158835 CTTCTTCTTCTACCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTC 158894 || | || | || ||||||| | || | || |||||| |||| || || || || Sbjct 5426 CTATTGCTCTTTCCTTGTGCTTATTTCGCGTTAGGAGGTTGGTTTACAGGTACAACCTTT 5485 Query 158895 GCTACGAGCTGGTATACACATGGACTCGCTACTTCCTATCTTGAGGG-TGCAAACTTTCT 158953 | || ||||||||||||||| | || | ||||||| | || || ||||| ||| | Sbjct 5486 GTAACTTCATGGTATACACATGGATTGGCGAGTTCCTATTTGGAAGGCTGCAA-CTTCTT 5544 Query 158954 TACAGCAGCAGTTTCGACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGG 159013 || || |||||||| ||||| ||| || | | | || ||| | || | || ||||| Sbjct 5545 AACCGCGGCAGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGG 5604 Query 159014 TCCTGAGGCTCAAGGGGATTTCGTCAGGTGGGTCCAACTTGGGGGACTCTGGAATTTTGT 159073 ||| || || ||||| ||||| | ||| ||| | || || || |||| |||||| Sbjct 5605 TCCAGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGT 5664 Query 159074 GGCGCTCCACGGTGCCTTTGCCCTAATTGGTTTCATGCTTCGCCAGTTTGAACTGGCACG 159133 || |||||||| || || | ||||| ||||||||| | || || |||||||| || || Sbjct 5665 TGCTCTCCACGGCGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCG 5724 Query 159134 -TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTG 159192 ||| || | | || || || ||||| || || ||||||| ||| ||||||||||||| Sbjct 5725 ATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTG 5783 Query 159193 TCAGCGTCTTCCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTG 159252 | || ||||| || || || || |||||||| ||||||| || || || |||| Sbjct 5784 TTTCTGTATTCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTG 5843 Query 159253 GGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGACACTAA 159312 | || || || ||||| | ||| | ||||| | |||||||| || ||||||||| | | Sbjct 5844 GTGTCGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGA 5903 Query 159313 ACCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCTGCTATTC 159372 |||| || ||||||||||| ||||| ||| | | || | || ||||||| ||||||| Sbjct 5904 ACCCATTTCATATGATGGGGGTTGCGGGTGTATTGGGCGCTGCCCTTCTATGCGCTATTC 5963 Query 159373 ATGGGGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGG 159432 |||| | || || |||||||| |||| || ||||| || ||||| || || | Sbjct 5964 ATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCCGTG 6023 Query 159433 CGTTTGATTCAACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 159492 | ||| | ||||||||| ||| || |||||||| |||||||| || |||||||| |||| Sbjct 6024 CTTTTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGT 6083 Query 159493 CGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTTATGTTGTTTG 159552 | || ||||| || |||| ||||| || || || ||| | |||||||||||||| |||| Sbjct 6084 CCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 6143 Query 159553 TGCCTGTTATGGGTCTATGGACATCCAGTATTGGCATTATTGGTCTT-GCTCTCAATCTT 159611 | || || | ||| |||||| | |||| | || | | ||| ||||| || || Sbjct 6144 TACCAGTAACCGGTTTATGGATGAGTGCTCTTGG-AGTAGTCGGCTTGGCTCTGAACCTA 6202 Query 159612 CGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAAACG 159671 || || || || ||||| ||| || ||| | ||||| |||||||| |||||||| ||| Sbjct 6203 CGCGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACG 6262 Query 159672 TTCTACACCAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGAT 159731 ||||||||||| || |||||| | |||||||| | ||||||||| |||| || ||| Sbjct 6263 TTCTACACCAAAAATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGAT 6322 Query 159732 CAACCCCATGAAAACTTCATCTTCCCAGAAGAAGTTCTACCAAGAGGTAACGC 159784 || || ||||||||| | || ||||| || || |||||||| | || ||||| Sbjct 6323 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGC 6375 >seq5990 Length=34798 Score = 542 bits (600), Expect = 3e-149 Identities = 701/963 (73%), Gaps = 4/963 (0%) Strand=Plus/Plus Query 157078 AACCGTTTGTATGTTGGTTGGTTCGGTGTGCTTATGATTCCAACATTGCTTGCAGCAACT 157137 |||| | | || |||| ||||| ||||| | ||||| || || || | | |||||| Sbjct 10040 AACCATCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 10099 Query 157138 ATCTGC-TTCATTGTTGCATTCGTAGCAGCACCTCCCGTTGATATCGACGGTATTCGCGA 157196 |||| || ||| |||| ||| | || | ||||| || ||||| || |||||||| || Sbjct 10100 -TCTGTATTTATTATTGCTTTCATTGCTACTCCTCCAGTGGATATTGATGGTATTCGTGA 10158 Query 157197 ACCAGTTGCTGGTTCTCTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCTTC 157256 ||| ||| |||| ||||| | || || || || || || |||||||| || ||||| | Sbjct 10159 ACCTGTTTCTGGATCTCTACTTTACGGAAATAATATTATTTCTGGTGCCATTATTCCTAC 10218 Query 157257 TTCAAACGCAATCGGTCTTCACTTCTACCCCATCTGGGAAGCAGCATCACTTGATGAGTG 157316 ||| || || ||| ||||||| ||||| || |||||||| | || ||||||| || Sbjct 10219 TTCTGCAGCTATAGGTTTTCACTTTTACCCAATATGGGAAGCTGTTTCCGTTGATGAATG 10278 Query 157317 GCTTTACAACGGTGGTCCTTTCCAACTGGTAGTCTTTCACTTCCTGATCGGCATCTATGC 157376 | | ||||| || ||||||| | || | || | |||||| | | || | | Sbjct 10279 GTTATACAATGGCGGTCCTTATAAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 10338 Query 157377 CTATATGGGACGTGAGTGGGAACTTTCTTACCGTTTAGGTATGCGCCCCTGGATCTGTGT 157436 |||||||| | ||||||||||||| || |||| ||||||||||||| ||||| ||| Sbjct 10339 TTATATGGGTCATGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGCTGT 10398 Query 157437 TGCCTACTCGGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCA 157496 ||| || || || ||||| |||| ||| | ||| || ||| | | ||||| | ||||| Sbjct 10399 TGCATATTCAGCTCCAGTTGCTGATGCAACTGCTGTTTTCTTGATATATCCCATTGGTCA 10458 Query 157497 AGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTCGT 157556 ||| || || || | ||||||||| || || ||||||||||| |||| ||| | || Sbjct 10459 AGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 10518 Query 157557 CTTCCAGGCAGAGCACAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGT 157616 |||||||| |||||||| || |||||||| || || |||||| | || || ||||| || Sbjct 10519 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 10578 Query 157617 ATTCGGTGGATCTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTC- 157675 ||||| || || | ||| ||||||||| || | | || |||| || | ||| || Sbjct 10579 ATTCGACGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACTT-CTAGTTTGATCA 10637 Query 157676 GTGAAACAACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGA 157735 | ||||| || |||| || || ||| | ||||||| ||||||||||| ||||| | Sbjct 10638 GGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAA 10697 Query 157736 CGTACAACATCGTTGCTGCACACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCAT 157795 | || || ||||| ||||| || ||||| || || || |||| |||||||| ||| | Sbjct 10698 CTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATTTTCCAATATGCTAGTT 10757 Query 157796 TCAACAACAGCAGAAGTCTTCACTTCTTCCTCGCCGCATGGCCTGTTGTCGGCATCTGGT 157855 ||||||| | | | || |||||||| || || |||||||| || || ||||||| Sbjct 10758 TCAACAATTCTCGTTCTTTACATTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGT 10817 Query 157856 TCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGT 157915 ||||||| | || | ||||| ||||| |||||| | || |||||||| |||||||| | Sbjct 10818 TCACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAAT 10877 Query 157916 CCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTCCTGAACCGCGCTG 157975 | | ||||| |||| |||| ||| | || |||||||| || | | || || ||| Sbjct 10878 CTGTAGTTGATAGTCAAGGTCATGTAATTAATACCTGGGCTAATATTATTAATCGTGCTA 10937 Query 157976 GTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTGGATCTTGCTG 158035 ||||||||||||||||||||||| ||||| || || || ||||| || || | ||| Sbjct 10938 ACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTT 10997 Query 158036 CTG 158038 ||| Sbjct 10998 CTG 11000 >seq9596 Length=34882 Score = 176 bits (194), Expect = 5e-39 Identities = 200/266 (75%), Gaps = 2/266 (1%) Strand=Plus/Plus Query 159508 TTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTTATGTTGTTTGTGCCTGTTATGGGTC 159567 |||| ||||| || || || ||| | |||||||||||||| ||||| || || | ||| Sbjct 5359 TTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTT 5418 Query 159568 TATGGACATCCAGTATTGGCATTATTGGTCTTG-CTCTCAATCTTCGTGCTTACGATTTC 159626 |||||| | |||| | || | | |||| |||| || || || || || || ||| Sbjct 5419 TATGGATGAGTGCTCTTGG-AGTAGTCGACTTGGCTCTGAACCTACGCGCCTATGACTTC 5477 Query 159627 GTGAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAAACGTTCTACACCAAGAAC 159686 || ||| || ||| | ||||| |||||||| |||||||| |||||||||||||| || Sbjct 5478 GTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCAAAAAT 5537 Query 159687 ATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAAC 159746 |||||| | |||||||| | ||||||||| |||| || ||||| || ||||||||| Sbjct 5538 ATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAAC 5597 Query 159747 TTCATCTTCCCAGAAGAAGTTCTACC 159772 | || ||||| || || |||||||| Sbjct 5598 CTTATATTCCCTGAGGAGGTTCTACC 5623 >seq5685 Length=160749 Score = 127 bits (140), Expect = 2e-24 Identities = 162/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 157816 CACTTCTTCCTCGCCGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGC 157875 || |||||||| || |||||| | || || || |||||||| || | || | | | Sbjct 78507 CATTTCTTCCTTATGGCTTGGCCTATAGTAGGTATTTGGTTCACCGCTTTAGGTATCAAC 78566 Query 157876 ACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 157935 || ||||| |||||| | || |||||||| |||||||| ||| | ||||| |||| ||| Sbjct 78567 ACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGT 78626 Query 157936 CGTGTGTTGAACACCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATG 157995 |||| | || |||| || ||| | | || || ||| ||||||| |||||||||| Sbjct 78627 TGTGTAATTAATACCTAGGTTGATATTATTAATCGTGCTAACCTTGGTACGGAAGTTATG 78686 Query 157996 CATGAGCGTAACGCACACAACTTCCCACTGGATCTTGCTGCTG 158038 | ||| ||||| || || || ||||| || || | ||| ||| Sbjct 78687 CGTGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 78729 >seq4685 Length=19895 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 157492 GGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATG 157551 ||||||| ||| || ||| |||||||||||| || ||||||||||| |||| || Sbjct 6887 GGTCAAGAAAGTTTTTCTAATGGTATGCCTCTTGGAATTTCTGGTACTTTCAACTTCGTG 6828 Query 157552 CTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCCGTTCCACATG 157599 | || ||||||| |||||||| || |||||||| || || |||||| Sbjct 6827 ATTGTATTCCAGGTTGAGCACAACATCCTTATGCACCCATTTCACATG 6780 >seq13284 Length=8732 Score = 82.4 bits (90), Expect = 8e-11 Identities = 171/247 (69%), Gaps = 7/247 (3%) Strand=Plus/Minus Query 158951 TCTTA-CAGCAGCAGTTTCGACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTTCTCT 159009 ||||| | || |||||||| ||||| || || | | | || ||| | || | || | Sbjct 2579 TCTTAACCGCGGCAGTTTCTACTCCTACTAATAGTTTAGCACACTCTTTGTTGTTACTAT 2520 Query 159010 GGGGTCCTGAGGCTCAAGGGGATTTCGT-CAGGTGGGTC-CAACTTGGGGGACTCTGGAA 159067 ||||||| | || |||| ||| ||| | || || ||| | || | || |||| Sbjct 2519 GGGGTCCAAAAGCATAAGGAGAT--CGTACTCGTTAGTGTCAATTAGGCAGTCTGTGGAC 2462 Query 159068 TTTTGTGGCGCTCCACGGTGCCTTTGCCCTAATTGGTTTCATGCTTCGCCAGTTTGAACT 159127 |||||| || ||||| | || || ||||| ||||||||| | || || |||||||| Sbjct 2461 TTTTGTTGCTCTCCATGACGCTTTCAAACTAATAGGTTTCATGTTACGTCAATTTGAACT 2402 Query 159128 GGCACG-TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTG 159186 || | ||| || | | || || || ||||| || || |||| || ||| ||||||| Sbjct 2401 TGCTCAATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTTTGCTCCAATTGCTG 2343 Query 159187 TTTTTGT 159193 ||||||| Sbjct 2342 TTTTTGT 2336 >seq2250 Length=25732 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 159632 TCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAAACGTTCTACACCAAGAACATTCT 159691 |||||| || | |||||||||||||| ||||||| |||||||||||||| || ||||| Sbjct 5410 TCAAGAAATTCGTGCAGCAGAAGATCCTAAATTTGAGACGTTCTACACCAAAAATATTCT 5469 Query 159692 TCTGAATGAAGGACTACGTGCTT 159714 | | |||||||| | |||||| Sbjct 5470 TTTAAATGAAGGCATTAGTGCTT 5492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544999899916480