Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq40156 540 1e-148 seq5990 506 2e-138 seq9596 159 4e-34 seq388 105 8e-18 seq4408 102 1e-16 seq4685 98.7 1e-15 seq5685 91.5 2e-13 >seq40156 Length=57058 Score = 540 bits (598), Expect = 1e-148 Identities = 726/1005 (72%), Gaps = 4/1005 (0%) Strand=Plus/Plus Query 178949 TGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179008 ||||||||||| | |||| || || || ||||| |||||||| || || | || Sbjct 5376 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCT 5435 Query 179009 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179068 |||| ||||||| | || | || |||||| |||| || ||| | ||||| || | Sbjct 5436 TTCCTTGTGCTTATTTCGCGTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 5495 Query 179069 GGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCT 179127 |||| || ||||| | || ||||||||| | ||||| ||| ||||| | || || || Sbjct 5496 GGTATACACATGGATTGGCGAGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCGGCA 5554 Query 179128 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 179187 || || || |||||| || | | | || ||| | | |||| |||||||| || | Sbjct 5555 GTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGGTCCAGAAGCA 5614 Query 179188 CAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCAC 179247 || || |||| || ||||| ||| | || || || |||| ||| || ||||||||| Sbjct 5615 CAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCAC 5674 Query 179248 GGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGG 179306 || || |||| ||||| || |||||| | ||||| |||||||| || || ||| || Sbjct 5675 GGCGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAA 5734 Query 179307 TATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATT 179366 | | || ||||| ||||| || || || ||| ||| ||||| || || ||| |||||| Sbjct 5735 T-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATT 5793 Query 179367 TCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGC 179426 || || || || || || || || |||||||||||||||| |||||||| || || Sbjct 5794 CCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTCGCAGC 5853 Query 179427 GATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCA 179486 || ||| ||||| | || || || ||||| || || || |||||| | ||||| ||||| Sbjct 5854 TATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCA 5913 Query 179487 CATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAAC 179546 |||||||| ||||| ||| | |||| | ||| || || | ||||||||||| | || Sbjct 5914 TATGATGGGGGTTGCGGGTGTATTGGGCGCTGCCCTTCTATGCGCTATTCATGGTGCTAC 5973 Query 179547 TGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTC 179606 ||||| ||||| || | ||||||||| || ||||| ||||| || || || | Sbjct 5974 CGTAGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCCGTGCTTTTAACCC 6033 Query 179607 TACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTT 179666 || |||| ||| || || ||||| ||||| || || ||||| |||||||| || ||||| Sbjct 6034 AACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTT 6093 Query 179667 CGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCAT 179726 |||||| | ||| |||||| |||||||| || ||||||| | | ||||| || || | Sbjct 6094 TGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 6153 Query 179727 GGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATGA 179786 ||| | ||| | | || |||| | | || | ||||| || || || || ||||| Sbjct 6154 CGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCTTGGCTCTGAACCTACGCGCCTATGA 6213 Query 179787 TTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAAA 179846 || || ||| || ||| | ||||| ||||||||||| || ||||||||||| || || Sbjct 6214 CTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCAA 6273 Query 179847 GAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATGA 179906 || |||||| | |||||||| | ||||||||| |||| || ||||| || ||||| Sbjct 6274 AAATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGA 6333 Query 179907 AAACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951 |||| | || ||||| || || || ||||| |||| ||||| || Sbjct 6334 AAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 6378 >seq5990 Length=34798 Score = 506 bits (560), Expect = 2e-138 Identities = 679/938 (72%), Gaps = 5/938 (1%) Strand=Plus/Plus Query 177600 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGT 177658 || ||||| || || ||||||| || || | ||| | |||||| |||| || || | Sbjct 10055 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTAT 10113 Query 177659 CGCCTTCGTCGCTGCTCCCCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTC 177718 || ||| | ||| |||| || ||||| || || || || |||||||| || |||| || Sbjct 10114 TGCTTTCATTGCTACTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 10173 Query 177719 ACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGG 177778 || | || || || || || || |||||||| || | || |||| || || || Sbjct 10174 TCTACTTTACGGAAATAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGG 10233 Query 177779 TCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGG 177838 | ||||||| || || || |||||||| | || ||||||| ||| | || || || || Sbjct 10234 TTTTCACTTTTACCCAATATGGGAAGCTGTTTCCGTTGATGAATGGTTATACAATGGCGG 10293 Query 177839 TCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGA 177898 ||||| | || | || | |||||| | | || | | |||||||| | ||| Sbjct 10294 TCCTTATAAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGA 10353 Query 177899 GTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACC 177958 |||||||||| | |||||||||||||||||| ||||| ||||||||| || || || Sbjct 10354 GTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCC 10413 Query 177959 TGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTCAAGGTTCATTCTCCG 178017 ||||| | ||| | || || ||||| | | ||||| | |||||||| || || | Sbjct 10414 AGTTGCTGATGCAACTGCTGT-TTTCTTGATATATCCCATTGGTCAAGGAAGCTTTTCTG 10472 Query 178018 ATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAAC 178077 | | ||||||||| || || ||||||||||| |||| |||| |||||||||| || || | Sbjct 10473 ACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGC 10532 Query 178078 ACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTC 178137 |||| |||||||||||||| || |||||| | ||||| ||||| ||||||| || || | Sbjct 10533 ACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGACGGTTCCC 10592 Query 178138 TTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGACAGAAA 178197 | ||| |||||||||||| | | || |||||| | || | || || ||||||| Sbjct 10593 TATTCAGTGCTATGCATGGTTGCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAA 10652 Query 178198 CTGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCG 178257 ||| || ||| | ||||||| ||||| ||||| |||||||| ||||| ||||| | Sbjct 10653 ATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAG 10712 Query 178258 CAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTT 178317 | || |||||||| || || || ||||| ||||||||||| |||||||| || |||| Sbjct 10713 CTGCTCATGGTTATTTTGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTT 10772 Query 178318 CACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTG 178377 | | || |||||||| || || ||||||||||| || ||||||||||| || | ||| Sbjct 10773 CTTTACATTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTA 10832 Query 178378 TATCCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGAC 178437 | ||| ||||| || ||| | ||||| ||||| |||||||| || | | || | | Sbjct 10833 TCAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTC 10892 Query 178438 AAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAG 178497 |||| | ||| | || || ||||| | | | || ||||| || || ||||||| Sbjct 10893 AAGGTCATGTAATTAATACCTGGGCTAATATTATTAATCGTGCTAACCTTGGTATGGAAG 10952 Query 178498 TCATGCACGAAAGAAATAGCACATAACTTCCCGCTTGA 178535 | ||||| ||| | ||| || ||||| ||||| || || Sbjct 10953 TTATGCATGAACGTAAT-GCTCATAATTTCCCTCTAGA 10989 >seq9596 Length=34882 Score = 159 bits (176), Expect = 4e-34 Identities = 202/278 (73%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 179669 GGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCATGG 179728 ||||| | ||| |||||| |||||||| || ||||||| | | ||||| || || | | Sbjct 5356 GGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCG 5415 Query 179729 GTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATGATT 179788 || | ||| | | || |||| | | | | ||||| || || || || ||||| | Sbjct 5416 GTTTATGGATGAGTGCTCTTGGAGTAGTCGACTTGGCTCTGAACCTACGCGCCTATGACT 5475 Query 179789 TTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAAAGA 179848 | || ||| || ||| | ||||| ||||||||||| || ||||||||||| || || | Sbjct 5476 TCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCAAAA 5535 Query 179849 ACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATGAAA 179908 | |||||| | |||||||| | ||||||||| |||| || ||||| || ||||||| Sbjct 5536 ATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAA 5595 Query 179909 ACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAAC 179946 || | || ||||| || || || ||||| |||| ||| Sbjct 5596 ACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAAC 5633 >seq388 Length=54843 Score = 105 bits (116), Expect = 8e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 179478 CCCCTTTCACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCA 179537 ||| ||||| |||||||||||||| ||| | |||||| |||||| || | ||||| ||| Sbjct 28339 CCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGTTGCTCTTCTATGTGCTACTCA 28280 Query 179538 TGGAGTAACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTA 179593 ||| | ||||||||||||||| || |||||||| || | ||||| ||||||| Sbjct 28279 TGGTGCAACTGTAGAGAATACTTTAGTTGAAGATGATGATAATGCAAATACATTTA 28224 >seq4408 Length=147402 Score = 102 bits (112), Expect = 1e-16 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 138527 CTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCT 138586 |||||||| |||||||| ||| | ||||| | ||||| |||| || || || || | Sbjct 127738 CTGATGATGCTTACATCCTAGATTCAGCTGAGAATGCAGGAGTTGAGCTGCCTTATTCAT 127797 Query 138587 GTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGT 138646 | | ||||| || || |||||||||||||| || | || ||| | ||||| || | Sbjct 127798 GCAGGGCTGGGGCTTGCTCTACCTGTGCTGGGAAGATGGTGACAGGCTCAGTAGACCAAT 127857 Query 138647 CTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAG 138706 |||| || ||||||||||| | ||||| | ||| ||| | ||||||| || | Sbjct 127858 CTGATGGTTCATTCCTTGATGAAAATCAAATGAAGGAAGGTTTTGTGCTGACTTGTGTCG 127917 Query 138707 CATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTATACTGA 138762 | ||||| || | || ||| | ||| | || | || || | || || |||||| Sbjct 127918 CGTACCCAACTGCAGACTGTGTGATTCACACACACAAGGAAGGTGATCTTTACTGA 127973 >seq4685 Length=19895 Score = 98.7 bits (108), Expect = 1e-15 Identities = 75/89 (84%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 178018 ATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAAC 178077 ||| |||||||||||| || ||||||||||| |||| | || |||||||||| | || | Sbjct 6868 ATGGTATGCCTCTTGGAATTTCTGGTACTTTCAACTTCGTGATTGTATTCCAGGTTGAGC 6809 Query 178078 ACAATATCCTTATGCACCCGTTCCACATG 178106 |||| |||||||||||||| || |||||| Sbjct 6808 ACAACATCCTTATGCACCCATTTCACATG 6780 >seq5685 Length=160749 Score = 91.5 bits (100), Expect = 2e-13 Identities = 156/225 (69%), Gaps = 1/225 (0%) Strand=Plus/Plus Query 178311 TCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCA 178370 || ||||| | || |||||||| || |||||| |||| || || ||||||||||| Sbjct 78495 TCTCGTTCTTTACATTTCTTCCTTATGGCTTGGCCTATAGTAGGTATTTGGTTCACCGCT 78554 Query 178371 CTTGGTGTATCCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTC 178430 | ||| | ||| ||||| || ||| | ||||| ||||| |||||||| ||| | | Sbjct 78555 TTAGGTATCAACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTT 78614 Query 178431 GACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGC 178490 || | ||||| |||| | || || | || || | | || ||||| || || Sbjct 78615 GATAGTCAAGGTTGTGTAATTAATACCTAGGTTGATATTATTAATCGTGCTAACCTTGGT 78674 Query 178491 ATGGAAGTCATGCACGAAAGAAATAGCACATAACTTCCCGCTTGA 178535 | |||||| |||| ||| | ||| || ||||| ||||| || || Sbjct 78675 ACGGAAGTTATGCGTGAACGTAAT-GCTCATAATTTCCCTCTAGA 78718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605363185348960