Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq11073 84.2 3e-11 seq6638 82.4 1e-10 >seq11073 Length=25683 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 50417 TGAATTTAGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTAC 50476 ||||||| || | || | |||| ||||||||||||||||| |||||||||||| | | Sbjct 7623 TGAATTTGTCTGTTACCTCACCATACAATGCTGATTTTGATGGTGATGAAATGAATATGC 7564 Query 50477 ATGTTCCTCAATCATATGGAGCTA 50500 ||||||||||||||| || | ||| Sbjct 7563 ATGTTCCTCAATCATTTGAAACTA 7540 >seq6638 Length=124252 Score = 82.4 bits (90), Expect = 1e-10 Identities = 122/171 (71%), Gaps = 4/171 (2%) Strand=Plus/Minus Query 192993 CGTATACCTGAAATAGGGGATAAATTTTGT--TCGGGAATGGCCCAAAAAGGAACTTGTG 193050 || |||||| ||||||||||||||||| | |||| | ||| |||||||||| | Sbjct 12222 CGAATACCTCAAATAGGGGATAAATTTAGCAGTCGGCATGGGC--AAAAAGGAACAGTGG 12165 Query 193051 GTATGATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTA 193110 | |||| ||| | |||||||| ||||||| || | ||| || || ||||| | Sbjct 12164 GCATGACATATACTCAAGAAGACATGCCATGGACTATGGAAGGGATCACCCCTGATATCA 12105 Query 193111 TTATTAATCCAAATTGTATTCCGTCCAGAATGACCATTAATCAAATTATTG 193161 || |||||||| || ||||| || | ||||| ||| |||| | |||| Sbjct 12104 TTGTTAATCCACATGCCATTCCTTCACGTATGACAATTGGTCAACTGATTG 12054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628215708764160