Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq11073 98.7 2e-15 seq3205 98.7 2e-15 seq11595 96.9 8e-15 >seq11073 Length=25683 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/215 (71%), Gaps = 14/215 (7%) Strand=Plus/Minus Query 304934 ATGCAGGCATCTCAAAGATCTGGCAGACCT-TTAAAGG-----GTATTAGGCAACGCATT 304987 || |||||| | || ||||| || ||||| ||||| ||| ||||| || Sbjct 8306 ATACAGGCAACCCAGAGATCAGGGAGACCAATTAAATCTATCTGTAGTAGGC------TT 8253 Query 304988 AAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCA 305047 |||| || || ||||| || ||||||| | ||||| |||||||| |||||| ||| Sbjct 8252 AAAGCAAAGGAAGGTCGAATCAGAGGTAACTTGATGGGGAAACGTGTGGATTTTTCAGCA 8193 Query 305048 AGAAGTGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAA 305107 ||| ||| || || |||||| | | |||| | || | ||||| || || ||| | || Sbjct 8192 CGAACTGTTATTACTCCTGATCCAAACATTAATATTGACGAATTGGGGGTCCCA-TGGAG 8134 Query 305108 -ATTGCTTTAAAACTAACATTTCCAGAGAAAGTTA 305141 ||||||||||| || |||| |||||||| |||| Sbjct 8133 TATTGCTTTAAATCTCACATATCCAGAGACTGTTA 8099 >seq3205 Length=116236 Score = 98.7 bits (108), Expect = 2e-15 Identities = 159/225 (71%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 279875 GATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGAAAATTGGTA 279934 ||||| |||| ||| || | || ||| | ||| | | |||||| || || || || Sbjct 51759 GATGGCCTGAAGCCTGGCCAAAGGAAAATTCTTTTCTGCTCTTTCAAGAGGAACTTTGTC 51700 Query 279935 AAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGTTATCATCAC 279994 |||||| ||||| ||||| | |||||||| || || ||| ||| |||||||||| Sbjct 51699 AAGGAAGCAAAAGTTGCCCAGTTTTCTGGTTATGTGTCTGAGCATTCAGCTTATCATCAC 51640 Query 279995 GGTGA--AGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTATGGCTTCAA 280052 || || || |||| | | | | | || | || | || ||||||| | ||| || | Sbjct 51639 GGCGAGCAGAGTCT-TGCGA-GCACCATCATCGGAATGGCACAAGATTATGTGGGCTCCA 51582 Query 280053 ACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTA 280097 ||||| | || |||||| ||||||||| |||||||| |||||| Sbjct 51581 ACAACATTAACCTGCTTCAACCAAATGGCCAATTTGGCACTCGTA 51537 >seq11595 Length=158298 Score = 96.9 bits (106), Expect = 8e-15 Identities = 143/201 (71%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 279899 AAGATTATATTCAGTTGTTTCAAAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTA 279958 || ||| | ||| | | |||||| || || || || |||||| ||||| ||||| Sbjct 108447 AAAATTCTTTTCTGCTCTTTCAAGAGGAACTTTGTCAAGGAAGCAAAAGTTGCCCAGTTT 108388 Query 279959 GCAGGTTATGTTTCAGAACATGCAGGTTATCATCACGGT--GAAGCGTCTCTTCAAGGTG 280016 | |||||||| || || ||| ||||||||||||||||| |||| |||| | | || Sbjct 108387 TCTGGTTATGTGTCTGAGCATTCAGGTTATCATCACGGTGAGAAGAGTCTTGTGA--GTA 108330 Query 280017 CTATTGTAGGTCTTGCCCAAGATTTTATGGCTTCAAACAACTTAAATCTGCTTTCACCAA 280076 | || | | | || ||||| | | ||| || |||||| | || || ||| ||||| Sbjct 108329 CCATCATCAGAATGGCACAAGACTATGTGGGCTCCAACAACATTAACCTCCTTCAACCAA 108270 Query 280077 ATGGTCAATTTGGTTCTCGTA 280097 |||| |||||||| |||||| Sbjct 108269 ATGGCCAATTTGGCACTCGTA 108249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186202186297916