Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq5990 544 2e-150 seq5685 129 2e-25 seq6232 125 2e-24 >seq5990 Length=34798 Score = 544 bits (602), Expect = 2e-150 Identities = 700/956 (73%), Gaps = 10/956 (1%) Strand=Plus/Plus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 |||| |||||| |||| |||||||| ||||||| || | || ||| || | Sbjct 10040 AACCATCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 10098 Query 19592 ATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 |||| || |||||||| |||||||| |||| ||||| || |||||||| || || || Sbjct 10099 TTCTGTATTTATTATTGCTTTCATTGCTACTCCTCCAGTGGATATTGATGGTATTCGTGA 10158 Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG 19710 ||| || || || || ||||| ||||| || || || || || ||| | |||| | Sbjct 10159 ACCTGTTTCTGGATCTCTACTTTACGGAAATAATATTATTTCTGGTGCCATTATTCCTAC 10218 Query 19711 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAA 19768 | ||| || || || | ||||| |||||||| ||||||||| ||| |||||||| Sbjct 10219 TTCTGCA--GCTATAGGTTTTCACTTTTACCCAATATGGGAAGCTGTTTCCGTTGATGAA 10276 Query 19769 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTAT 19828 ||| | ||||| || || || | | || | || | |||||| | |||| | | Sbjct 10277 TGGTTATACAATGGCGGTCCTTATAAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT 10336 Query 19829 GCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGT 19888 ||| ||||| | |||||||||||||| | || ||||| ||| | ||||||||| | Sbjct 10337 TGTTATATGGGTCATGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGCT 10396 Query 19889 GTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGG 19947 ||||| || || ||||| ||||| | || |||| || ||||| | | || || |||| Sbjct 10397 GTTGCATATTCAGCTCCAGTTGCTGATGCAACTGCTGT-TTTCTTGATATATCCCATTGG 10455 Query 19948 TCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTT 20007 ||| || ||||| || || | ||||||| | || || || ||||| ||||||| |||| | Sbjct 10456 TCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGAT 10515 Query 20008 GGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGG 20067 |||||||| || || || ||||| || |||||||| || |||||| | ||||| ||||| Sbjct 10516 TGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGG 10575 Query 20068 TGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG- 20126 |||||||| || || ||||||||||| ||||| |||| ||||| || | || | ||| Sbjct 10576 TGTATTCGACGGTTCCCTATTCAGTGCTATGCATGGTT-GCTTGGTAACTTCTAGTTTGA 10634 Query 20127 TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAG 20186 | | || || || ||| | ||| | ||| | ||||||| || || ||||| |||| Sbjct 10635 TCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAG 10694 Query 20187 AGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTT 20246 | || ||||| |||||||| ||||||||||| ||||| || ||||| |||||||| ||| Sbjct 10695 AAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATTTTCCAATATGCTA 10754 Query 20247 CTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTT 20306 |||||||||| |||||| |||| |||||||| || || ||||| || ||||| || | Sbjct 10755 GTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCT 10814 Query 20307 GGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACC 20366 ||||| |||| || || | || ||||| || || | || |||||||| || |||| Sbjct 10815 GGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACC 10874 Query 20367 AGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTG 20426 | || | | || | | |||| ||| ||| |||| |||||| | ||| | ||||||| Sbjct 10875 AATCTGTAGTTGATAGTCAAGGTCATGTAATTAATACCTGGGCTAATATTATTAATCGTG 10934 Query 20427 CTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGAC 20482 |||| || || | || || ||||||||||| ||||||||||| ||||| || ||| Sbjct 10935 CTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGAC 10990 >seq5685 Length=160749 Score = 129 bits (142), Expect = 2e-25 Identities = 164/224 (73%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 20261 CGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTG 20320 |||||| |||| ||||||||| || ||||| | ||||| ||||||||| | || || Sbjct 78498 CGTTCTTTACATTTCTTCCTTATGGCTTGGCCTATAGTAGGTATTTGGTTCACCGCTTTA 78557 Query 20321 GGCGTTTCTACA--ATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCG 20378 || | || ||| ||||| || || | || |||||||| || ||||| ||| | | | Sbjct 78558 GG--TATCAACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTTG 78615 Query 20379 ACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGT 20438 | | | ||| |||| ||| |||| | || ||| ||| | ||||||||||| || || Sbjct 78616 ATAGTCAAGGTTGTGTAATTAATACCTAGGTTGATATTATTAATCGTGCTAACCTTGGTA 78675 Query 20439 TTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGAC 20482 || || |||| |||||| ||||||||||| ||||| || ||| Sbjct 78676 CGGAAGTTATGCGTGAACGTAATGCTCATAATTTCCCTCTAGAC 78719 >seq6232 Length=104065 Score = 125 bits (138), Expect = 2e-24 Identities = 181/251 (72%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 ||||||||||| |||| |||||||| ||||||| || | || ||| | | Sbjct 82867 AACCGTCTTTACATTGGATGGTTTGGCGTTTTGATGATCCC-TACCTTATTGACCGTAAC 82809 Query 19592 ATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 |||| || |||||||| |||||||| ||||| || || || |||||||| || || || Sbjct 82808 TTCTGTATTTATTATTGCTTTCATTGCTGCTCCTCCGGTGGATATTGATGGTATTCGTGA 82749 Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG 19710 ||| || || || || ||||| ||||| || || || || || ||| | |||| | Sbjct 82748 ACCTGTTTCTGGATCTCTACTTTACGGAAATAATATTATTTCTGGTGCCATTATTCCTAC 82689 Query 19711 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAA 19768 | ||| || || || | ||||| |||||||| ||||||||| |||| |||||||| Sbjct 82688 TTCTGCA--GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCTGGTTCCGTTGATGAA 82631 Query 19769 TGGCTCTACAA 19779 ||| | ||||| Sbjct 82630 TGGTTATACAA 82620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148757830614648