Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq5990 509 5e-140 seq5685 127 6e-25 seq6232 120 9e-23 >seq5990 Length=34798 Score = 509 bits (564), Expect = 5e-140 Identities = 692/955 (72%), Gaps = 10/955 (1%) Strand=Plus/Plus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 |||| |||||| |||| |||||||| ||||||| || | || ||| || | Sbjct 10040 AACCATCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 10098 Query 28720 ATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 |||| || |||||||| |||||||| | || ||||| || |||||||| || || || Sbjct 10099 TTCTGTATTTATTATTGCTTTCATTGCTACTCCTCCAGTGGATATTGATGGTATTCGTGA 10158 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 |||||| ||||| ||| || || ||||| || || || || || ||| | | || | Sbjct 10159 ACCTGTTTCTGGATCTCTACTTTACGGAAATAATATTATTTCTGGTGCCATTATTCCTAC 10218 Query 28839 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAA 28896 | ||| || || || | ||||| |||||||| ||||||||| ||| |||||||| Sbjct 10219 TTCTGCA--GCTATAGGTTTTCACTTTTACCCAATATGGGAAGCTGTTTCCGTTGATGAA 10276 Query 28897 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTAT 28956 ||| | ||||| || || || | | || | || | |||||| | |||| || | Sbjct 10277 TGGTTATACAATGGCGGTCCTTATAAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT 10336 Query 28957 GCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGT 29016 ||| ||||| | |||||||||||||| | || ||||| ||| | || |||||| | Sbjct 10337 TGTTATATGGGTCATGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGCT 10396 Query 29017 GTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTA-CCCATTCGG 29075 || ||||| |||||||| || || | ||| |||| |||||| | | || |||||| || Sbjct 10397 GTTGCATATTCAGCTCCAGTTGCTGATGCAACTGCTGTTTTCTTGATATATCCCATT-GG 10455 Query 29076 TCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCT 29135 |||||| ||| |||| |||||| | || ||||| || || ||||||| |||| | Sbjct 10456 TCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGAT 10515 Query 29136 GGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGG 29195 || ||||| || || || ||||| || |||||||| || |||||| | || || ||||| Sbjct 10516 TGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGG 10575 Query 29196 AGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGT 29255 || |||| || || ||||| ||||| ||||| |||| ||||| | | || | ||| Sbjct 10576 TGTATTCGACGGTTCCCTATTCAGTGCTATGCATGGTT-GCTTGGTAACTTCTAGTTTGA 10634 Query 29256 GC-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAG 29314 | | || || || ||| | ||| ||| | ||||||| || || ||||| |||| Sbjct 10635 TCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAG 10694 Query 29315 AGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTT 29374 | |||||||| |||||||| ||||| ||||| ||||| || ||||| |||||||||||| Sbjct 10695 AAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATTTTCCAATATGCTA 10754 Query 29375 CTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTT 29434 |||||| ||| |||||| |||| |||||||| || || ||||| || ||||| || | Sbjct 10755 GTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCT 10814 Query 29435 GGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACC 29494 ||||| |||| || || | || ||||| || || | || ||||| || || |||| Sbjct 10815 GGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACC 10874 Query 29495 AGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCG 29554 | || | | || | | |||| ||| |||||||| |||||| || || | ||||| | Sbjct 10875 AATCTGTAGTTGATAGTCAAGGTCATGTAATTAATACCTGGGCTAATATTATTAATCGTG 10934 Query 29555 CTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGA 29609 ||||||| || | ||||| |||||||| |||||||||||||| ||||| || || Sbjct 10935 CTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGA 10989 >seq5685 Length=160749 Score = 127 bits (140), Expect = 6e-25 Identities = 163/223 (73%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 29389 CGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTG 29448 |||||| |||| ||||||||| || ||||| | ||||| ||||||||| | || || Sbjct 78498 CGTTCTTTACATTTCTTCCTTATGGCTTGGCCTATAGTAGGTATTTGGTTCACCGCTTTA 78557 Query 29449 GGCGTTTCTACA--ATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCG 29506 || | || ||| ||||| || || | || ||||| || || ||||| || | | | Sbjct 78558 GG--TATCAACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTTG 78615 Query 29507 ACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCT 29566 | | | ||| |||| |||||||| | || |||| || | ||||| |||||||| || Sbjct 78616 ATAGTCAAGGTTGTGTAATTAATACCTAGGTTGATATTATTAATCGTGCTAACCTTGGTA 78675 Query 29567 TTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGA 29609 ||||| |||| ||| |||||||||||||| ||||| || || Sbjct 78676 CGGAAGTTATGCGTGAACGTAATGCTCATAATTTCCCTCTAGA 78718 >seq6232 Length=104065 Score = 120 bits (132), Expect = 9e-23 Identities = 180/251 (72%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 ||||||||||| |||| |||||||| ||||||| || | || ||| | | Sbjct 82867 AACCGTCTTTACATTGGATGGTTTGGCGTTTTGATGATCCC-TACCTTATTGACCGTAAC 82809 Query 28720 ATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 |||| || |||||||| |||||||| || || || || || |||||||| || || || Sbjct 82808 TTCTGTATTTATTATTGCTTTCATTGCTGCTCCTCCGGTGGATATTGATGGTATTCGTGA 82749 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 |||||| ||||| ||| || || ||||| || || || || || ||| | | || | Sbjct 82748 ACCTGTTTCTGGATCTCTACTTTACGGAAATAATATTATTTCTGGTGCCATTATTCCTAC 82689 Query 28839 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAA 28896 | ||| || || || | ||||| |||||||| ||||||||| ||| |||||||| Sbjct 82688 TTCTGCA--GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCTGGTTCCGTTGATGAA 82631 Query 28897 TGGCTCTACAA 28907 ||| | ||||| Sbjct 82630 TGGTTATACAA 82620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146595662141976