Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq5990 603 3e-168 seq6232 150 5e-32 seq5685 145 2e-30 seq4685 86.0 2e-12 >seq5990 Length=34798 Score = 603 bits (668), Expect = 3e-168 Identities = 733/989 (74%), Gaps = 10/989 (1%) Strand=Plus/Plus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||| | ||| ||||||| | || |||| |||||| || || |||||||| || Sbjct 10013 TTCTGTAAATGGATAACCAGCATTGAAAACCATCTTTACATTGGATGGTTTGGTGTTTTG 10072 Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841 ||||| || | || ||| | || ||| | ||| || |||||||| ||||||||| | | Sbjct 10073 ATGATCCC-TACCTTATTGACCGCAACT-TCTGTATTTATTATTGCTTTCATTGCTACTC 10130 Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACA 18901 |||| || || |||||||| || || || |||||| | || ||| ||||| ||||| | Sbjct 10131 CTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAATA 10190 Query 18902 ACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCC 18959 | || || || || ||| | |||| | | ||| || || || | ||||| ||||| Sbjct 10191 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCA--GCTATAGGTTTTCACTTTTACCC 10248 Query 18960 AATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGT 19019 ||| ||||||||| ||| ||||||||||| | ||||| || || || | | || | Sbjct 10249 AATATGGGAAGCTGTTTCCGTTGATGAATGGTTATACAATGGCGGTCCTTATAAGCTAAT 10308 Query 19020 GGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTA 19079 || | |||||| | |||| || | ||| ||||| | |||||||||||||| | Sbjct 10309 TGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGAGTGGGAACTTAGTTT 10368 Query 19080 TCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTC 19139 || ||||| ||||||||||||||| |||||| || |||||||| ||||| | || | Sbjct 10369 CCGTCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGATGCAAC 10428 Query 19140 TGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGG 19199 ||| || ||| | | ||||| |||||||||| |||| |||| ||||||| | || Sbjct 10429 TGCTGTTTTCTTGATATATCCCATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGG 10488 Query 19200 TATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCA 19259 ||| |||||| ||||||| |||| |||||||||||||||| || |||||||| ||||| Sbjct 10489 AATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCA 10548 Query 19260 CCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCA 19319 ||| || |||||| | ||||| |||||||| |||| ||| || ||||| ||||| ||||| Sbjct 10549 CCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGACGGTTCCCTATTCAGTGCTATGCA 10608 Query 19320 CGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACT 19378 |||| ||||| || | || | ||| | | ||||| || ||| | | |||| ||| Sbjct 10609 TGGTT-GCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACG 10667 Query 19379 ATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATT 19438 | || |||| || || ||||| ||||| |||||||| || || ||||||||||| |||| Sbjct 10668 AAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATT 10727 Query 19439 TTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTT 19498 |||| || | |||||||| || || ||||||||| |||||| |||||||||| Sbjct 10728 TTGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCC 10787 Query 19499 TGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCAT 19558 | || ||||||||||| || || || ||||| | || | || | ||||| ||||| | Sbjct 10788 TAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTT 10847 Query 19559 TCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTG 19618 ||||||| ||||| || || || ||||| || | |||| | | |||| ||| ||| Sbjct 10848 TCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCATGTAATTA 10907 Query 19619 ATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTA 19678 |||| |||||| | ||| | |||||||||||||| || | || || ||||| ||||||| Sbjct 10908 ATACCTGGGCTAATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 10967 Query 19679 ATGCTCATAACTTCCCACTTGATTTGGCT 19707 |||||||||| ||||| || || || ||| Sbjct 10968 ATGCTCATAATTTCCCTCTAGACTTAGCT 10996 >seq6232 Length=104065 Score = 150 bits (166), Expect = 5e-32 Identities = 205/279 (73%), Gaps = 8/279 (3%) Strand=Plus/Minus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||| ||| | ||||||| || || ||||||||||| || || |||||||| || Sbjct 82894 TTCTGTAACTAGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGCGTTTTG 82835 Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841 ||||| || | || ||| | | ||| | ||| || |||||||| ||||||||||| | Sbjct 82834 ATGATCCC-TACCTTATTGACCGTAACT-TCTGTATTTATTATTGCTTTCATTGCTGCTC 82777 Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACA 18901 |||| || || |||||||| || || || |||||| | || ||| ||||| ||||| | Sbjct 82776 CTCCGGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAATA 82717 Query 18902 ACATCATATCGGGAGCCGTCGTTCCGA--GCAGCAATGCCATCGGACTACACTTCTACCC 18959 | || || || || ||| | |||| | | ||| || || || | ||||| ||||| Sbjct 82716 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCA--GCTATAGGTTTGCACTTTTACCC 82659 Query 18960 AATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAA 18998 ||| ||||||||| ||| ||||||||||| | ||||| Sbjct 82658 AATATGGGAAGCTGGTTCCGTTGATGAATGGTTATACAA 82620 >seq5685 Length=160749 Score = 145 bits (160), Expect = 2e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 19480 CGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTT 19539 |||||| |||||||||| | ||||||||| | || || |||||||| |||| | Sbjct 78498 CGTTCTTTACATTTCTTCCTTATGGCTTGGCCTATAGTAGGTATTTGGTTCACCGCTTTA 78557 Query 19540 GGGGTAAGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGAC 19599 || | | ||| ||||| |||||||| ||||| || || || ||||| ||| | |||| Sbjct 78558 GGTATCAACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTTGAT 78617 Query 19600 AACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTT 19659 | | ||| |||| ||| |||| | || ||| ||| | |||||||||||||| || Sbjct 78618 AGTCAAGGTTGTGTAATTAATACCTAGGTTGATATTATTAATCGTGCTAACCTTGGTACG 78677 Query 19660 GAGGTAATGCACGAACGTAATGCTCATAACTTCCCACTTGATTTGGCT 19707 || || |||| ||||||||||||||||| ||||| || || || ||| Sbjct 78678 GAAGTTATGCGTGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCT 78725 >seq4685 Length=19895 Score = 86.0 bits (94), Expect = 2e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 19188 TATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAA 19247 ||||||| | || ||| |||||| ||||||| | || |||||||||||| ||| || || Sbjct 6864 TATGCCTCTTGGAATTTCTGGTACTTTCAACTTCGTGATTGTATTCCAGGTTGAGCACAA 6805 Query 19248 CATCCTCATGCACCCGTTCCACATG 19272 |||||| |||||||| || |||||| Sbjct 6804 CATCCTTATGCACCCATTTCACATG 6780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141081492841848