Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq5335 95.1 1e-14 seq2332 86.0 6e-12 seq2326 86.0 6e-12 >seq5335 Length=19063 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 131932 CTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATA 131991 ||| |||||||||||||| || || ||| || |||||| ||||| || || | | | Sbjct 7323 CTCCTTTTGAATGTTGTAATCAGCCAGGGTGCGGCCATCTTCAAGCTGCTTTCCAGCAAA 7382 Query 131992 GATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTG 132051 ||| || | ||| |||||||| || || || || || || ||| || ||||| | Sbjct 7383 GATGAGCCTCTGCTGATCTGGTGGGATACCCTCCTTGTCCTGAATCTTAGCTTTCACGTT 7442 Query 132052 TTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAT 132111 || | ||||||| |||||| || | || | || || |||||||||||||| | Sbjct 7443 ATCGATGGTATCGGAGCTCTCCACCTCAAGAGTGATTGTCTTCCCAGTCAGAGTTTTCAC 7502 Query 132112 GAAAATCTGCAT 132123 ||||||||||| Sbjct 7503 AAAAATCTGCAT 7514 >seq2332 Length=86198 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||| | | |||||||| |||||||| ||||| || || | |||||| Sbjct 74668 AACCAAATGAAGAGTAGACTCTTTCTGAATGTTATAGTCAGCCAAAGTCCTGCCATCTTC 74609 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 |||||||| || | | || || | |||||| ||||| || || ||||||||||| Sbjct 74608 AAGCTGTTTTCCAGCGAATATCAGCCTCTGTTGGTCTGGTGGAATACCTTCTTTATCCTG 74549 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||||||| || | | || | |||||| | ||| || || | || | || || Sbjct 74548 AATTTTTGCCTTAACATTGTCAATAGTATCAGAGCTCTCGACCTCAAGAGTAATAGTCTT 74489 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||| |||| || || ||||| Sbjct 74488 GCCAGTAAGAGTCTTTACAAAGATTTGCAT 74459 >seq2326 Length=95029 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||| | | |||||||| |||||||| ||||| || || | |||||| Sbjct 85223 AACCAAATGAAGAGTAGACTCTTTCTGAATGTTATAGTCAGCCAAAGTCCTGCCATCTTC 85164 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 |||||||| || | | || || | |||||| ||||| || || ||||||||||| Sbjct 85163 AAGCTGTTTTCCAGCGAATATCAGCCTCTGTTGGTCTGGTGGAATACCTTCTTTATCCTG 85104 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||||||| || | | || | |||||| | ||| || || | || | || || Sbjct 85103 AATTTTTGCCTTAACATTGTCAATAGTATCAGAGCTCTCAACCTCAAGAGTAATAGTCTT 85044 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||| |||| || || ||||| Sbjct 85043 GCCAGTAAGAGTCTTTACAAAGATTTGCAT 85014 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||| | ||| | ||| | |||| || || ||||| ||||| || || || Sbjct 85463 ACGAAGGCGGAGAACAAGATGGAGTGTTGATTCCTTCTGAATATTGTAATCAGCCAGAGT 85404 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || || ||||| || | | |||| || | ||| ||||||||||| || || Sbjct 85403 GCGACCATCCTCAAGTTGTTTTCCAGCAAAGATGAGCCTCTGCTGATCTGGAGGAATCCC 85344 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| ||||| ||| ||| ||| | | || | ||||| | |||||| || | Sbjct 85343 TTCCTTATCTTGAATCTTTGCTTTAACATTATCTATGGTATCAGAGCTCTCCACCTCAAG 85284 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || ||||||||||| || | ||||||||||| Sbjct 85283 GGTGATGGTCTTCCCAGTCAGAGTCTTAACAAAAATCTGCAT 85242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476371965008160