Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq762 87.8 2e-12 seq2332 86.0 6e-12 >seq762 Length=331234 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || || ||||| ||| | ||||| | || || || | Sbjct 300695 ATGCAAATTTTTGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTTGAGAGCTCT 300754 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || ||| || || || ||||||||||| || || || || Sbjct 300755 GATACTATTGATAATGTCAAAGCTAAGATCCAAGACAAAGAGGGTATCCCACCGGACCAA 300814 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACAA 25353 || || || |||| | ||||| || | ||||||| || | | ||| |||||||| Sbjct 300815 CAGAGGCTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAG-GACCTTAGCTGATTACAA 300873 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 |||||||| || || ||| | || || ||| | ||||| | ||||||| Sbjct 300874 CATTCAAAAGGAGTCAACCCTGCACTTGGTGCTGCGATTGCGTGGAGGAA 300923 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || || || || ||| | || || | ||||| || | Sbjct 316681 ATGCAAATTTTTGTGAAGACCTTGACTGGCAAAACAATTACTTTGGAAGTTGAGAGCTCT 316740 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || ||| |||||| || || |||||||| || || || ||| Sbjct 316741 GACACCATTGATAACGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCAGACCAG 316800 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || | || | | ||| |||||||||||||||| | | | | ||| ||||| Sbjct 316801 CAGAGGTTGATCTTTGCCGGTAAACAACTCGAAGATGGTCGCACACTTGCCGACTACAAC 316860 Query 25355 ATTCAAAAAGAATCCACCATTCA 25377 || ||||| ||||||||| |||| Sbjct 316861 ATACAAAAGGAATCCACCCTTCA 316883 >seq2332 Length=86198 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| | || ||||| | || || |||| ||||| | Sbjct 73775 ATGCAGATCTTTGTCAAAACTCTCACTGGAAAGACCATAACTCTCGAGGTCGAGAGCTCT 73834 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || ||| ||||||| || || ||||| || || || || ||| Sbjct 73835 GATACAATTGATAATGTCAAAGCAAAAATTCAGGACAAGGAGGGAATCCCACCAGACCAG 73894 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || || || | | |||||||| | || |||| | | | | | |||||||| Sbjct 73895 CAGAGGCTGATCTTTGCTGGCAAACAGTTGGAGGATGGTCGTACTTTGGCTGATTACAAC 73954 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || |||||||||||| | || ||||| | | |||||||| || Sbjct 73955 ATCCAGAAAGAATCCACCCTCCACTTAGTTCTTCGTTTGAGAGGTGG 74001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444870984865920