Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq762 98.7 8e-16 seq2332 84.2 2e-11 seq2326 84.2 2e-11 seq6121 82.4 6e-11 seq4898 82.4 6e-11 >seq762 Length=331234 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||| ||||||||||| || |||||||| |||||||| ||| |||| ||| Sbjct 301150 AATGCAGATTTTTGTTAAGACCTTGACTGGGAAGACCATAACCCTGGAGGTTGAAAGTTC 301209 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | ||| | |||||| ||| ||| ||||| || || | || ||||| Sbjct 301210 TGATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGAATTCCTCCAGATCA 301269 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 || |||||||||| ||| |||||||| | |||||| | || ||| |||||||| Sbjct 301270 GCAGAGGCTTATTTTTGCAGGCAAACAGCTTGAAGATGGAAGGACCCTGGCTGATTACAA 301329 Query 106439 CATACAAAAAGAATCTACACTACA 106462 || ||||| || ||||| || || Sbjct 301330 TATCCAAAAGGAGTCTACTCTGCA 301353 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||||||||||||||| || ||||| ||||| ||||| || |||| || | Sbjct 300694 AATGCAAATTTTTGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTTGAGAGCTC 300753 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| || ||| | || ||| || || |||||||| || | || || || Sbjct 300754 TGATACTATTGATAATGTCAAAGCTAAGATCCAAGACAAAGAGGGTATCCCACCGGACCA 300813 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||| ||||| |||| ||| ||||| || || |||||| | || | | |||||||| Sbjct 300814 ACAGAGGCTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGACCTTAGCTGATTACAA 300873 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 ||| ||||| || || || || || || || || | || || |||||| Sbjct 300874 CATTCAAAAGGAGTCAACCCTGCACTTGGTGCTGCGATTGCGTGGAGGA 300922 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||||||||| || || || |||||||| || ||||| ||| |||| ||| | Sbjct 300922 AATGCAAATTTTCGTGAAGACTTTGACTGGGAAAACCATAACCTTGGAGGTTGAAAGCTC 300981 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| || ||| | | ||||| ||| || ||||| ||||| | || || || Sbjct 300982 AGATACTATTGACAATGTGAAGGCAAAGATACAAGACAAGGAAGGTATCCCACCAGACCA 301041 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||||||||||| | ||| ||||| || | |||||| | ||| | | |||||||| Sbjct 301042 GCAAAGGCTTATATTTGCAGGCAAGCAGCTTGAAGATGGAAGGACTCTTGCAGATTACAA 301101 Query 106439 CATACAAAAAGAATCTACACTACAT 106463 || || || || ||||| || ||| Sbjct 301102 TATCCAGAAGGAGTCTACCCTTCAT 301126 >seq2332 Length=86198 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||| ||||| || || | ||||||||||| ||||| | || || | Sbjct 74458 AATGCAAATCTTTGTAAAGACTCTTACTGGCAAGACTATTACTCTTGAGGTCGAGAGCTC 74517 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| || ||| | | || || ||||||| || |||||||| | || || || Sbjct 74518 TGATACTATTGACAATGTTAAGGCAAAAATTCAGGATAAAGAAGGTATTCCACCAGACCA 74577 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||| ||||| || | || || ||||| | |||||| | ||| ||| || || || Sbjct 74578 ACAGAGGCTGATATTCGCTGGAAAACAGCTTGAAGATGGCAGGACTTTGGCTGACTATAA 74637 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 ||| || ||||| ||||| || ||||| || | ||| | || |||||| Sbjct 74638 CATTCAGAAAGAGTCTACTCTTCATTTGGTTCTCAGGCTTCGTGGAGGA 74686 >seq2326 Length=95029 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||| ||||| || || | ||||||||||| ||||| | || || | Sbjct 85013 AATGCAAATCTTTGTAAAGACTCTTACTGGCAAGACTATTACTCTTGAGGTTGAGAGCTC 85072 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| || ||| | | || || ||||||| || |||||||| | || || || Sbjct 85073 TGATACTATTGACAATGTTAAGGCAAAAATTCAGGATAAAGAAGGTATTCCACCAGACCA 85132 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||| ||||| || | || || ||||| | |||||| | ||| ||| || || || Sbjct 85133 ACAGAGGCTGATATTCGCTGGAAAACAGCTTGAAGATGGCAGGACTTTGGCTGACTATAA 85192 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 ||| || ||||| ||||| || ||||| || | ||| | || |||||| Sbjct 85193 CATTCAGAAAGAGTCTACTCTTCATTTGGTTCTCAGGCTTCGCGGAGGA 85241 >seq6121 Length=68638 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 106353 GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAA 106412 ||||| ||||| | ||| || ||||| ||||| |||| ||| || || ||||| ||| Sbjct 2959 GACAAGGAAGGTATCCCCCCGGACCAACAGAGGCTGATTTTTGCTGGTAAGCAATTGGAA 3018 Query 106413 GATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||| | |||| | | ||||||||||| ||||| || || ||||| || | || ||| Sbjct 3019 GATGGTCGAACTCTTGCTGATTACAACATCCAAAAGGAGTCGACACTTCACCTGGTTTTG 3078 Query 106473 AGGTTACGAGGAGGA 106487 || | || |||||| Sbjct 3079 AGACTTCGGGGAGGA 3093 >seq4898 Length=109433 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 106353 GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAA 106412 ||||| ||||| | ||| || ||||| ||||| |||| ||| || || ||||| ||| Sbjct 54356 GACAAGGAAGGTATCCCCCCAGACCAACAGAGGCTGATTTTTGCTGGTAAGCAATTGGAA 54415 Query 106413 GATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||| | |||| | | ||||||||||| ||||| || || ||||| || | || ||| Sbjct 54416 GATGGTCGAACTCTTGCTGATTACAACATCCAAAAGGAGTCAACACTTCACCTGGTTTTG 54475 Query 106473 AGGTTACGAGGAGGA 106487 || | || |||||| Sbjct 54476 AGACTTCGGGGAGGA 54490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402132699390848