Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq12080 324 2e-82 seq2443 91.5 2e-12 seq2694 87.8 3e-11 >seq12080 Length=19512 Score = 324 bits (358), Expect = 2e-82 Identities = 427/582 (73%), Gaps = 15/582 (3%) Strand=Plus/Plus Query 1455734 AACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAA 1455793 |||||| |||| || | |||| || || | |||| | ||||||||| |||||| || Sbjct 7952 AACCCGGACCGGTTCTGCATGTTTCCAATTCAGTACCCGGAGATATGGGAGATGTAC-AA 8010 Query 1455794 AAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGAC--ACGGTC 1455851 |||||||||||||| || |||||||||||||||||||| ||| || |||| ||| Sbjct 8011 GAAGGCCGAGGCCTCGTTCTGGACCGCCGAGGAGGTCGATCTCTCCGGCGACGTACGT-- 8068 Query 1455852 CACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTT 1455911 ||||||| || | ||| |||||| | || ||||||| ||||| |||||||| || Sbjct 8069 CACTGGGAAAACCTAACCGATGACGAGAGGCACTTCATCACTCACGTGCTCGCCTTCTT- 8127 Query 1455912 CGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCA 1455971 ||||||| ||| |||||||| ||||| ||||| || | || ||||| |||||||| Sbjct 8128 CGCCGCCTCCGACGGCATCGTTTTGGAGAATCTGGCGGGGAGGTTCATGAAGGAGGTCCA 8187 Query 1455972 ATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGA 1456031 | | ||||| || || || || |||||||| || ||||| ||||||||||| || Sbjct 8188 GGTTTCGGAGGCTCGCGCTTTCTATGGCTTCCAGATTGCGATCGAGAACATCCACTCCGA 8247 Query 1456032 AACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTT 1456091 || ||| ||| || |||| ||||| |||||||| ||| ||||||| ||| || || Sbjct 8248 AATGTACAGTCTCTTGCTCGAGACCTATATCAAGGACTCGGCCGAGAAGAACCGGCTGTT 8307 Query 1456092 TCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGAT 1456151 | ||| || || || || || | ||| ||| |||||||| ||||| || |||||| Sbjct 8308 CCACGCGATGGAGACCGTTCCTTGCGTGGCGAAGAAGGCCGAGTGGGCCCTGCGGTGGAT 8367 Query 1456152 CAACAAGGAGG-GCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGG 1456209 | || || || | ||| || || ||| ||||| ||| ||| || ||||||| || Sbjct 8368 CGAC--GGCGGAGAATCG----TTCGCGGAGAGGCTCATCGCCTTCGCTTGCGTCGAAGG 8421 Query 1456210 CATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCC 1456269 ||| || ||||| || || |||||||| || |||||||| || |||||||| | ||||| Sbjct 8422 CATTTTCTTCTCCGGAAGCTTCTGCGCGATATTTTGGCTAAAAAAGCGCGGGTTAATGCC 8481 Query 1456270 CGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAG 1456311 ||| || ||| |||||| || ||| || ||||||| Sbjct 8482 CGG-GTTAACCTTCTCCAACGAGTTGATCTCGCGAGACGAAG 8522 >seq2443 Length=192057 Score = 91.5 bits (100), Expect = 2e-12 Identities = 88/112 (79%), Gaps = 1/112 (1%) Strand=Plus/Plus Query 1455734 AACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAA 1455793 |||||| |||| || | ||||||| || | |||| | ||| ||||| |||||| || Sbjct 92087 AACCCGGACCGGTTCTACATGTTCCCGATTCAGTACCCGGAGATCTGGGAGATGTAC-AA 92145 Query 1455794 AAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGAC 1455845 |||||||||||||| || | |||||||||||||||||| ||| || |||| Sbjct 92146 GAAGGCCGAGGCCTCGTTCTAGACCGCCGAGGAGGTCGATCTCTCCGGCGAC 92197 >seq2694 Length=194030 Score = 87.8 bits (96), Expect = 3e-11 Identities = 82/103 (80%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 1455734 AACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAA 1455793 |||||| |||| || | ||||||| || | |||| | ||| ||||| |||||| || Sbjct 145794 AACCCGGACCGGTTCTGCATGTTCCCGATTCAGTACCTGGAGATCTGGGAGATGTAC-AA 145736 Query 1455794 AAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTC 1455836 |||||||| ||||| || |||||||||||||||||||| ||| Sbjct 145735 GAAGGCCGATGCCTCGTTCTGGACCGCCGAGGAGGTCGATCTC 145693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7173938079993272