Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq40156 596 2e-165 seq5990 556 1e-153 seq9596 190 2e-43 seq5685 138 1e-27 seq4685 100 3e-16 seq13182 98.7 1e-15 seq13284 96.9 4e-15 seq388 93.3 5e-14 seq9248 89.7 6e-13 seq2250 87.8 2e-12 >seq40156 Length=57058 Score = 596 bits (660), Expect = 2e-165 Identities = 750/1019 (74%), Gaps = 12/1019 (1%) Strand=Plus/Plus Query 159379 TTTGATGTCCTGGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 159438 |||||| | ||||||||||| | | || || || || ||||| |||||||| || Sbjct 5366 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 5425 Query 159439 CTCCTACTTCTTCCCACTGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGACTTTT 159498 || | || |||| ||||||| | || | || |||||| |||| || || || ||| Sbjct 5426 CTATTGCTCTTTCCTTGTGCTTATTTCGCGTTAGGAGGTTGGTTTACAGGTACAACCTTT 5485 Query 159499 ATCACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTACCTTGAAGG-TGCTAATTTTCT 159557 | || ||||| || || || | || |||||||| | ||||| ||| || || | Sbjct 5486 GTAACTTCATGGTATACACATGGATTGGCGAGTTCCTATTTGGAAGGCTGC-AACTTCTT 5544 Query 159558 CACGGCAGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 159617 || || || || || || |||||| || | | | || ||| | | |||| ||||| Sbjct 5545 AACCGCGGCAGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGG 5604 Query 159618 TCCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGT 159677 ||| || | ||||| || || || ||||| ||| | || || | ||| | ||||| Sbjct 5605 TCCAGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGT 5664 Query 159678 TGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTCG 159737 |||||||||||| || |||| || |||||||| ||| |||| ||||||||| ||||||| Sbjct 5665 TGCTCTCCACGGCGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCG 5724 Query 159738 -TCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTG 159796 ||| ||| | || ||||| ||||| || || ||||||| ||| ||||||||||||| Sbjct 5725 ATCT-GTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTG 5783 Query 159797 TCAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCG 159856 | |||||||| || ||||| || ||||||||| ||||||||||| || ||||| | Sbjct 5784 TTTCTGTATTCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTG 5843 Query 159857 GGGTAGCAGCAATCTTTAGAT---TCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCC 159913 | || ||||| || ||| ||| |||| || |||| ||||||| || || ||||| Sbjct 5844 GTGTCGCAGCTATATTTCGATTCATCCTCTTTTTCC--AAGGGTTT-CATAATTGGACAT 5900 Query 159914 TCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAA 159973 | ||||| || ||||||||||| ||||| ||| || | || | || || | || || | Sbjct 5901 TGAACCCATTTCATATGATGGGGGTTGCGGGTGTATTGGGCGCTGCCCTTCTATGCGCTA 5960 Query 159974 TCCATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTA 160033 | ||||||||||| ||||| || || || ||||||||||| || ||||| ||||| Sbjct 5961 TTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCC 6020 Query 160034 AGGCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCT 160093 || ||| | || ||||||| ||||| |||||||| |||||||| || |||||||| | Sbjct 6021 GTGCTTTTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTT 6080 Query 160094 GGTCGCAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGT 160153 |||| || ||||| || ||||| ||||| || || || ||| | ||||| || ||||| | Sbjct 6081 GGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTAT 6140 Query 160154 TTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTT-GCTTTCAAC 160212 |||| || || | ||| |||||| || |||| | || | | ||| ||| | ||| Sbjct 6141 TTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGG-AGTAGTCGGCTTGGCTCTGAAC 6199 Query 160213 CTTCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAG 160272 || || || || || ||||| |||||| || | ||||| |||||||||||||||||| Sbjct 6200 CTACGCGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAG 6259 Query 160273 ACCTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCT 160332 || ||||||||||| || || || || |||||||| |||||||||||||||| || Sbjct 6260 ACGTTCTACACCAAAAATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAA 6319 Query 160333 GATCAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACGCACT 160391 ||||| || ||||||||| |||| ||||||||||| || ||||| | || ||||| || Sbjct 6320 GATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 6378 >seq5990 Length=34798 Score = 556 bits (616), Expect = 1e-153 Identities = 724/994 (73%), Gaps = 8/994 (1%) Strand=Plus/Plus Query 157674 ACTTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTAC 157733 ||||||| | ||| ||||| | | |||| | | || |||| ||||| ||||| Sbjct 10011 ACTTCTGTAAATGGATAACCAGCATTGAAAACCATCTTTACATTGGATGGTTTGGTGTTT 10070 Query 157734 TGATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCT 157792 ||||||| ||||| || | | |||||| ||||| || || | || ||| | ||| || Sbjct 10071 TGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTGCTTTCATTGCTACT 10129 Query 157793 CCCCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAAC 157852 || || ||||| ||||| || || || ||||| ||| |||| || || | || || || Sbjct 10130 CCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAAT 10189 Query 157853 AACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCC 157912 || || || |||||||| || |||||| ||| || || ||| | ||||| ||||| Sbjct 10190 AATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTTCACTTTTACCCA 10249 Query 157913 ATCTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTA 157972 || |||||||| | || |||| || ||| | || || || ||||||| | || | Sbjct 10250 ATATGGGAAGCTGTTTCCGTTGATGAATGGTTATACAATGGCGGTCCTTATAAGCTAATT 10309 Query 157973 GTATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTCTCTTAC 158032 || | |||||| | | || | | |||||||| | |||||||||||| || | Sbjct 10310 GTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGAGTGGGAACTTAGTTTC 10369 Query 158033 CGTTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGT 158092 ||| ||||||||||||| ||||| ||| |||||||| |||||||| |||| || | | Sbjct 10370 CGTCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGATGCAACT 10429 Query 158093 GCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGT 158152 || || ||| | | ||||| | |||||||| || || || | ||||||||| || Sbjct 10430 GCTGTTTTCTTGATATATCCCATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGA 10489 Query 158153 ATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCAC 158212 || ||||||||||| |||| |||| |||||||||| || || |||||||||||||||||| Sbjct 10490 ATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCAC 10549 Query 158213 CCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCAT 158272 || || || ||| | ||||| ||||| ||||||| || || || ||| |||||||||| Sbjct 10550 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGACGGTTCCCTATTCAGTGCTATGCAT 10609 Query 158273 GGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTA 158331 || | | || ||||| | | | || | ||||| || |||| || || ||| | Sbjct 10610 GGTTGCTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGA 10668 Query 158332 CGGTTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCATGGCTACTT 158391 ||||| | ||||||||||| ||||| || || || ||||| || || ||||| || || Sbjct 10669 AGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTT 10728 Query 158392 CGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCT 158451 || || ||||| |||||||| ||| |||||||| || ||||| || || |||||||| Sbjct 10729 TGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCT 10788 Query 158452 TGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCA--ACCATGGCA 158509 || || |||||||| || || ||||||||||| | ||| || ||| || ||||| Sbjct 10789 AGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTG--CTTTAGGTATCAGCACTATGGCT 10846 Query 158510 TTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTG 158569 |||||| | || |||||||| |||||||| || | ||||| |||| |||| ||| | Sbjct 10847 TTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCATGTAATT 10906 Query 158570 AACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGT 158629 || |||||||| || | | || || ||| ||||||||||||||||||||||| ||| Sbjct 10907 AATACCTGGGCTAATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 10966 Query 158630 AACGCACACAACTTCCCACTGGATCTTGCTGCTG 158663 || || || || ||||| || || | ||| ||| Sbjct 10967 AATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 11000 >seq9596 Length=34882 Score = 190 bits (210), Expect = 2e-43 Identities = 204/267 (76%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 160111 GTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGT 160170 ||||| ||||| || || || ||| | ||||| || ||||| ||||| || || | ||| Sbjct 5358 GTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGT 5417 Query 160171 CTATGGACATCCTCTATTGGCATTATTGGTCTTG-CTTTCAACCTTCGTGCTTACGATTT 160229 |||||| || |||| | || | | |||| || | ||||| || || || || || Sbjct 5418 TTATGGATGAGTGCTCTTGG-AGTAGTCGACTTGGCTCTGAACCTACGCGCCTATGACTT 5476 Query 160230 CGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGACCTTCTACACCAAGAA 160289 ||| |||||| || | ||||| |||||||||||||||||||| ||||||||||| || Sbjct 5477 CGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCAAAAA 5536 Query 160290 CATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCTGATCAACCACATGAAAA 160349 || || || |||||||| |||||||||||||||| || ||||| || |||||||| Sbjct 5537 TATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAA 5596 Query 160350 CTTTATCTTCCCTGAGGAAGTACTACC 160376 | |||| ||||||||||| || ||||| Sbjct 5597 CCTTATATTCCCTGAGGAGGTTCTACC 5623 >seq5685 Length=160749 Score = 138 bits (152), Expect = 1e-27 Identities = 174/237 (73%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 158429 TCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCC 158488 || ||||| || || ||||||||| || |||||| | || || || |||||||||| Sbjct 78495 TCTCGTTCTTTACATTTCTTCCTTATGGCTTGGCCTATAGTAGGTATTTGGTTCACCG-- 78552 Query 158489 CTTGGCGTGTCA--ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCC 158546 ||| || ||| || ||||| |||||| | || |||||||| |||||||| ||| | Sbjct 78553 CTTTAGGTATCAACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAG 78612 Query 158547 TTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTG 158606 ||||| |||| ||| |||| | || |||| || ||| | | || || ||| |||| Sbjct 78613 TTGATAGTCAAGGTTGTGTAATTAATACCTAGGTTGATATTATTAATCGTGCTAACCTTG 78672 Query 158607 GTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTGGATCTTGCTGCTG 158663 ||| ||||||||||| ||| ||||| || || || ||||| || || | ||| ||| Sbjct 78673 GTACGGAAGTTATGCGTGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 78729 >seq4685 Length=19895 Score = 100 bits (110), Expect = 3e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 158117 GGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATG 158176 ||||||| ||| || ||| |||||||||||| || ||||||||||| |||| | || Sbjct 6887 GGTCAAGAAAGTTTTTCTAATGGTATGCCTCTTGGAATTTCTGGTACTTTCAACTTCGTG 6828 Query 158177 CTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATG 158224 |||||||||| | || |||||||||||||||||||| || || ||| Sbjct 6827 ATTGTATTCCAGGTTGAGCACAACATCCTTATGCACCCATTTCACATG 6780 >seq13182 Length=14344 Score = 98.7 bits (108), Expect = 1e-15 Identities = 97/124 (78%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 160254 AGAAGATCCTGAATTTGAGACCTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCG 160313 |||||||||||||||||||| ||||||||||| || || | || |||||||| || | Sbjct 7637 AGAAGATCCTGAATTTGAGATGTTCTACACCAAAAATATTAT-TTAAATGAAGGTATTTG 7579 Query 160314 TGCTTGGATGGCACCTGCTGATCAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACT 160373 |||||| |||||| || ||| | | ||| |||| |||| |||| |||||| || || Sbjct 7578 TGCTTGTATGGCAACTCAAGATTAGCTTCATAAAAAACTTATATTCCTTGAGGAGGTTCT 7519 Query 160374 ACCT 160377 |||| Sbjct 7518 ACCT 7515 >seq13284 Length=8732 Score = 96.9 bits (106), Expect = 4e-15 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 159667 TGGTCCTTTGTTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTT 159726 ||| | |||||||||||||| | || ||| || |||||||| ||| |||| |||||| Sbjct 2466 TGGACTTTTGTTGCTCTCCATGACGCTTTCAAACTAATAGGTTTCATGTTACGTCAATTT 2407 Query 159727 GAAATTGCTCG-TCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTAT 159785 ||| |||||| ||| ||| | || ||||| ||||| || || |||| || ||| || Sbjct 2406 GAACTTGCTCAATCT-GTTCAATTGCGACCTTATAATGCAATCGCATTCTTTGCTCCAAT 2348 Query 159786 TGCTGTTTTTGT 159797 |||||||||||| Sbjct 2347 TGCTGTTTTTGT 2336 >seq388 Length=54843 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 159918 CCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATCCA 159977 ||| || ||||||||||||||||| ||| || | |||| || || | ||||| | || Sbjct 28339 CCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGTTGCTCTTCTATGTGCTACTCA 28280 Query 159978 TGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAAGG 160036 |||||| ||||||||||| || || ||||||||| || | ||||| ||||||| || Sbjct 28279 TGGTGCAACTGTAGAGAATACTTTAGTTGAAGATGATGATAATGCAAATACATTTAGGG 28221 >seq9248 Length=16338 Score = 89.7 bits (98), Expect = 6e-13 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 159608 TACTTTGGGGTCCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTT 159667 |||| |||||||| || | |||| || || || ||||| ||| || | | | Sbjct 804 TACTATGGGGTCCAGAAGCGTAAGGAGATTTTACTCGTTGGTGTCAATCAGGCAGTCTGT 745 Query 159668 GGTCCTTTGTTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTG 159727 || | |||||||||||||||| || ||| || |||||||| ||| ||| |||||| Sbjct 744 GGACTTTTGTTGCTCTCCACGACGCTTTCAGACTAATAGGTTTCATGTTACATCAATTTA 685 Query 159728 AAATTGCTC-GTCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATT 159786 || |||||| ||| ||| | | ||||| ||||| ||||| |||| || ||| ||| Sbjct 684 AACTTGCTCAATCT-GTTCAATTGTGACCTTATAATGCAATTGCATTCTATGCTCCAATT 626 Query 159787 GCTGTT 159792 |||||| Sbjct 625 GCTGTT 620 >seq2250 Length=25732 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 160236 TCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGACCTTCTACACCAAGAACATCCT 160295 ||| || ||| | ||||||||||||||| |||||||||| ||||||||||| || || || Sbjct 5410 TCAAGAAATTCGTGCAGCAGAAGATCCTAAATTTGAGACGTTCTACACCAAAAATATTCT 5469 Query 160296 ATTGAATGAAGGACTTCGTGCTT 160318 || |||||||| || |||||| Sbjct 5470 TTTAAATGAAGGCATTAGTGCTT 5492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572736370603200