Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq5990 578 4e-160 seq40156 531 6e-146 seq9596 161 1e-34 seq5685 158 1e-33 seq4685 96.9 4e-15 seq4408 89.7 6e-13 >seq5990 Length=34798 Score = 578 bits (640), Expect = 4e-160 Identities = 700/948 (74%), Gaps = 4/948 (0%) Strand=Plus/Plus Query 160002 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGT 160060 || ||||| || || ||||||| || || | ||| | ||||| ||||| || || | Sbjct 10055 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTAT 10113 Query 160061 CGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTC 160120 || ||| | ||| |||| || ||||| || || || || |||||||| || |||| || Sbjct 10114 TGCTTTCATTGCTACTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 10173 Query 160121 ACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGG 160180 || | || || || || || || |||||||| || |||| |||| || || || Sbjct 10174 TCTACTTTACGGAAATAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGG 10233 Query 160181 TCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGG 160240 | ||||||| || || || |||||||| | || ||||||| ||| | || || || || Sbjct 10234 TTTTCACTTTTACCCAATATGGGAAGCTGTTTCCGTTGATGAATGGTTATACAATGGCGG 10293 Query 160241 TCCTTTCCAACTCGTAGTATTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGA 160300 ||||| | || | || | |||||| | | || | | |||||||| | ||| Sbjct 10294 TCCTTATAAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGA 10353 Query 160301 GTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCC 160360 |||||||||| | |||| ||||||||||||| ||||| ||| |||||||| ||||| Sbjct 10354 GTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCC 10413 Query 160361 AGTCGCTGCAGCATCTGCTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGA 160420 ||| |||| ||| ||||||| ||| | ||||||| | |||||||| || || || Sbjct 10414 AGTTGCTGATGCAACTGCTGTTTTCTTGATATATCCCATTGGTCAAGGAAGCTTTTCTGA 10473 Query 160421 TGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACA 160480 | ||||||||| || || ||||||||||| |||| |||| |||||||||| || || || Sbjct 10474 CGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCA 10533 Query 160481 CAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTT 160540 ||| ||||||||||| || || |||||| | || || ||||| ||||||| || || | Sbjct 10534 CAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGACGGTTCCCT 10593 Query 160541 GTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAA 160599 ||| ||||||||| || | | || ||||| | | | || | ||||| || |||| Sbjct 10594 ATTCAGTGCTATGCATGGTTGCTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAA 10652 Query 160600 CAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCG 160659 || || ||| | ||||| | ||||||||||||||||| || || || ||||| | Sbjct 10653 ATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAG 10712 Query 160660 CAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTT 160719 | || |||||||| || || || ||||| ||||||||||| |||||||| || |||| Sbjct 10713 CTGCTCATGGTTATTTTGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTT 10772 Query 160720 CACTTCACTTCTTCCTGGCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTG 160779 | | || |||||||| || || ||||||||||| || ||||||||||||||| | ||| Sbjct 10773 CTTTACATTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTA 10832 Query 160780 TTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTC 160839 | ||||| ||||| |||||| | || |||||||| |||||||| || | | ||| ||| Sbjct 10833 TCAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTC 10892 Query 160840 AAGGTCGTGTACTGAACACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAG 160899 |||||| |||| | || |||||||| | | | ||||||||| ||||||||||||| Sbjct 10893 AAGGTCATGTAATTAATACCTGGGCTAATATTATTAATCGTGCTAACCTTGGTATGGAAG 10952 Query 160900 TTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTCGCTGCTG 160947 |||||||||| ||||| || || || ||||| || ||| | ||| ||| Sbjct 10953 TTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 11000 >seq40156 Length=57058 Score = 531 bits (588), Expect = 6e-146 Identities = 735/1021 (72%), Gaps = 6/1021 (1%) Strand=Plus/Plus Query 161688 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 161747 ||||| || | || |||||| | |||| |||||||||||||| || ||||| || Sbjct 5366 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 5425 Query 161748 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTTC 161807 || | || |||| ||||||| | || | || |||||| |||| || ||||| || Sbjct 5426 CTATTGCTCTTTCCTTGTGCTTATTTCGCGTTAGGAGGTTGGTTTACAGGTACAACCTTT 5485 Query 161808 GCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTTG-AGGGTGCAAACTTTCT 161866 | ||| |||||||| ||||| | || ||||||||| | | ||| ||| ||||| | Sbjct 5486 GTAACTTCATGGTATACACATGGATTGGCGAGTTCCTATTTGGAAGGCTGC-AACTTCTT 5544 Query 161867 TACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGG 161925 || ||| ||||| ||||| ||| | | | | || ||| || || || || |||| Sbjct 5545 AACCGCGGCAGTTTCTACTCCTGCTAATAGTTTAGCACACTCT-TTGTTGTTACTATGGG 5603 Query 161926 GTCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTTTG 161985 |||| || || ||||| ||||| || ||| ||| | || || || |||| ||||| Sbjct 5604 GTCCAGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTG 5663 Query 161986 TGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCAC 162045 | || ||||| || || |||| ||||| || |||||| | ||||| |||||||| || | Sbjct 5664 TTGCTCTCCACGGCGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTC 5723 Query 162046 GTCTTATTGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTG 162105 | | || | || || || ||||| || || ||||||| ||| ||||||||||||| Sbjct 5724 GATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTG 5783 Query 162106 TCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTG 162165 | || ||||| || || || | |||||||| ||||||| || || || |||| Sbjct 5784 TTTCTGTATTCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTG 5843 Query 162166 GGGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTGA 162225 | || ||||| || ||| ||||| | | ||| | ||||| || ||||| ||||| ||| Sbjct 5844 GTGTCGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGA 5903 Query 162226 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTC 162285 |||| || ||||||||||| ||||| ||| || | || | || ||||||| ||||||| Sbjct 5904 ACCCATTTCATATGATGGGGGTTGCGGGTGTATTGGGCGCTGCCCTTCTATGCGCTATTC 5963 Query 162286 ACGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGG 162345 | || | || || |||||||| |||| || ||||| || ||||| || || | Sbjct 5964 ATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCCGTG 6023 Query 162346 CGTTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 162405 | ||| | | || || | |||||| |||||||| |||||||| || |||||||| |||| Sbjct 6024 CTTTTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGT 6083 Query 162406 CGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTG 162465 | || ||||| || |||| ||||| || || || ||| | ||||| || ||||| |||| Sbjct 6084 CCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 6143 Query 162466 TGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTT-GCTCTCAACCTT 162524 | || || | ||| |||||| || |||| | || | | ||| ||||| ||||| Sbjct 6144 TACCAGTAACCGGTTTATGGATGAGTGCTCTTGG-AGTAGTCGGCTTGGCTCTGAACCTA 6202 Query 162525 CGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCTGAGTTTGAAACG 162584 || || || || ||||| |||||| ||| | ||||| ||||||||||| ||||| ||| Sbjct 6203 CGCGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACG 6262 Query 162585 TTCTACACTAAGAACATTCTGCTCAATGAAGGACTACGTGCATGGTTAGCACCTGCCGAC 162644 |||||||| || || ||||| | |||||||| | ||||| ||| | || || || Sbjct 6263 TTCTACACCAAAAATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGAT 6322 Query 162645 CAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAA 162704 || || ||||| ||| |||| ||||| || || ||||| || | || ||||| |||||| Sbjct 6323 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAA 6382 Query 162705 T 162705 | Sbjct 6383 T 6383 >seq9596 Length=34882 Score = 161 bits (178), Expect = 1e-34 Identities = 209/286 (73%), Gaps = 2/286 (1%) Strand=Plus/Plus Query 162421 TTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTC 162480 |||| ||||| || || || ||| | ||||| || ||||| ||||| || || | ||| Sbjct 5359 TTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTT 5418 Query 162481 TATGGACATCCTCTATTGGCATTATTGGTCTTG-CTCTCAACCTTCGTGCTTACGATTTC 162539 |||||| || |||| | || | | |||| |||| ||||| || || || || ||| Sbjct 5419 TATGGATGAGTGCTCTTGG-AGTAGTCGACTTGGCTCTGAACCTACGCGCCTATGACTTC 5477 Query 162540 GTGAGTCAGGAGATCAGAGCAGCAGAAGATCCTGAGTTTGAAACGTTCTACACTAAGAAC 162599 || |||||| ||| | ||||| ||||||||||| ||||| ||||||||||| || || Sbjct 5478 GTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCAAAAAT 5537 Query 162600 ATTCTGCTCAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAAC 162659 ||||| | |||||||| | ||||| ||| | || || || || || ||||| ||| Sbjct 5538 ATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAAC 5597 Query 162660 TTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 162705 |||| ||||| || || ||||| || | || ||| | ||||||| Sbjct 5598 CTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACACTCTTTAAT 5643 >seq5685 Length=160749 Score = 158 bits (174), Expect = 1e-33 Identities = 176/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 160713 TCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCT 160772 || ||||| | || |||||||| || |||||| |||| || || |||||||| ||| Sbjct 78495 TCTCGTTCTTTACATTTCTTCCTTATGGCTTGGCCTATAGTAGGTATTTGGTTCACCGCT 78554 Query 160773 CTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTC 160832 | ||| | | ||| ||||| |||||| | || |||||||| |||||||| ||| | | Sbjct 78555 TTAGGTATCAACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTT 78614 Query 160833 GATGGTCAAGGTCGTGTACTGAACACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGT 160892 ||| |||||||| ||||| | || |||| || || | | ||||||||| |||||| Sbjct 78615 GATAGTCAAGGTTGTGTAATTAATACCTAGGTTGATATTATTAATCGTGCTAACCTTGGT 78674 Query 160893 ATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTCGCTGCTG 160947 | ||||||||||| ||| ||||| || || || ||||| || ||| | ||| ||| Sbjct 78675 ACGGAAGTTATGCGTGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 78729 >seq4685 Length=19895 Score = 96.9 bits (106), Expect = 4e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 160401 GGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATG 160460 ||||||| ||| || ||| |||||||||||| || ||||||||||| |||| | || Sbjct 6887 GGTCAAGAAAGTTTTTCTAATGGTATGCCTCTTGGAATTTCTGGTACTTTCAACTTCGTG 6828 Query 160461 CTTGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATG 160508 |||||||||| | || ||||| ||||||||||| || || |||||| Sbjct 6827 ATTGTATTCCAGGTTGAGCACAACATCCTTATGCACCCATTTCACATG 6780 >seq4408 Length=147402 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 161126 TACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGT 161185 ||||| ||||| |||| || | ||||||||||| | ||||| || | ||||| Sbjct 127749 TACATCCTAGATTCAGCTGAGAATGCAGGAGTTGAGCTGCCTTATTCATGCAGGGCTGGG 127808 Query 161186 GCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCC 161245 ||||||||| ||||||| || || || | |||| |||||||||| ||||| || Sbjct 127809 GCTTGCTCTACCTGTGCTGGGAAGATGGTGACAGGCTCAGTAGACCAATCTGATGGTTCA 127868 Query 161246 TTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCTACT 161305 ||| | ||||| | || || | || || | |||| ||||| || || || ||| Sbjct 127869 TTCCTTGATGAAAATCAAATGAAGGAAGGTTTTGTGCTGACTTGTGTCGCGTACCCAACT 127928 Query 161306 AGCGATTGTGTGATTCAAACTGAGCAAG--AGGAGAATCTGTACTGA 161350 || ||||||||||| || | |||| ||| | |||| |||||| Sbjct 127929 GCAGACTGTGTGATTCACACACA-CAAGGAAGGTG-ATCTTTACTGA 127973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559223156967200