Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq40156 518 4e-142 seq5990 518 4e-142 seq9596 176 6e-39 seq388 93.3 5e-14 seq5685 89.7 6e-13 seq4685 84.2 3e-11 >seq40156 Length=57058 Score = 518 bits (574), Expect = 4e-142 Identities = 727/1009 (72%), Gaps = 12/1009 (1%) Strand=Plus/Plus Query 182371 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 182430 |||| |||||| | |||| || || || ||||| |||||||| || || | || Sbjct 5376 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCT 5435 Query 182431 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 182490 |||| ||||||| | || | || |||||| |||| || ||| | ||||| || | Sbjct 5436 TTCCTTGTGCTTATTTCGCGTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 5495 Query 182491 GGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCT 182549 |||| || || || | || ||||||| | ||||| ||| ||||| | || || || Sbjct 5496 GGTATACACATGGATTGGCGAGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCGGCA 5554 Query 182550 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 182609 || || || |||||| || | | | || ||| | | |||| |||||||| || | Sbjct 5555 GTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGGTCCAGAAGCA 5614 Query 182610 CAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCAC 182669 || || |||| || ||||| ||| | || || || |||| ||| || ||||||||| Sbjct 5615 CAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCAC 5674 Query 182670 GGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCG-CCTGATTGG 182728 || || |||| || || ||||||||| | | ||||||||||||||||| ||| || Sbjct 5675 GGCGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTG-TTCA 5733 Query 182729 AATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTT 182788 | | ||||||| ||||| || || || |||| ||| |||||||| || || ||| || Sbjct 5734 ATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATT 5793 Query 182789 CCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGC 182848 ||| || ||||| | || ||||| |||||| || ||||| ||||||||||| || Sbjct 5794 CCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTCGCAGC 5853 Query 182849 GATCTTCAGGT---TCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTT 182905 || || | | |||| || |||| ||||||| || || |||||| | ||||| || Sbjct 5854 TATATTTCGATTCATCCTCTTTTTCC--AAGGGTTT-CATAATTGGACATTGAACCCATT 5910 Query 182906 CCATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGT 182965 ||||||||||| ||||| ||| || |||| | || || || | ||||| ||||||| Sbjct 5911 TCATATGATGGGGGTTGCGGGTGTATTGGGCGCTGCCCTTCTATGCGCTATTCATGGTGC 5970 Query 182966 CACAGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGA 183025 || ||||| ||||| || | ||||||||| || ||||| ||||| || || | Sbjct 5971 TACCGTAGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCCGTGCTTTTAA 6030 Query 183026 TTCCACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAAT 183085 | ||||| | ||| || || ||||| ||||| || || || || |||||||| ||||| Sbjct 6031 CCCAACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAAT 6090 Query 183086 CTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGT 183145 ||| |||||||| ||| |||||| |||||||| || ||||||||||| ||||| || || Sbjct 6091 CTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGT 6150 Query 183146 CATGGGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTT-GCTCTTAATCTTCGTGCTT 183204 | ||| | ||| | | || || ||| | | ||||| ||||| || || || || | Sbjct 6151 AACCGGTTTATGGATGAGTGCTCTT-GGAGTAGTCGGCTTGGCTCTGAACCTACGCGCCT 6209 Query 183205 ATGATTTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACA 183264 |||| || || ||| || || | ||||| ||||||||||| || ||||||||||||| Sbjct 6210 ATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACA 6269 Query 183265 CAAAGAACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCTGCCGATCAACCAC 183324 | || || || ||| | |||||||| | ||||||||| |||| || ||||| || | Sbjct 6270 CCAAAAATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTC 6329 Query 183325 ATGAAAACTTCATCTTCCCTGAAGAAGTTCTACCTAGAGGTAACGCACT 183373 |||||||| | || |||||||| || |||||||| | || ||||| || Sbjct 6330 ATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 6378 >seq5990 Length=34798 Score = 518 bits (574), Expect = 4e-142 Identities = 678/936 (72%), Gaps = 2/936 (0%) Strand=Plus/Plus Query 181023 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGT 181081 || ||||| || || ||||||| || || | ||| | |||||| ||||| || || | Sbjct 10055 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTAT 10113 Query 181082 CGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTC 181141 || ||| | ||| |||| || ||||| || || || || |||||||| || |||| || Sbjct 10114 TGCTTTCATTGCTACTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 10173 Query 181142 ACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGG 181201 || | || || || || || || |||||||| || |||| |||| || || || Sbjct 10174 TCTACTTTACGGAAATAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGG 10233 Query 181202 TCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGG 181261 | ||||||| || || || |||||||| | || ||||||| ||| | || || || || Sbjct 10234 TTTTCACTTTTACCCAATATGGGAAGCTGTTTCCGTTGATGAATGGTTATACAATGGCGG 10293 Query 181262 TCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATTTATGCATACATGGGACGTGA 181321 ||||| | || | || | |||||| | | || | | || ||||| | ||| Sbjct 10294 TCCTTATAAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGA 10353 Query 181322 ATGGGAACTCTCTTACCGCTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCC 181381 |||||||| || ||| ||||||||||||| ||||| ||||||||| || ||||| Sbjct 10354 GTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCC 10413 Query 181382 AGTCGCAGCAGCATCTGCTGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGA 181441 ||| || | ||| ||||||| ||| | | ||||| | |||||||| || ||||| Sbjct 10414 AGTTGCTGATGCAACTGCTGTTTTCTTGATATATCCCATTGGTCAAGGAAGCTTTTCTGA 10473 Query 181442 CGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCA 181501 || ||||| || || || |||||||| ||||||| |||| |||| ||||| || ||||| Sbjct 10474 CGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCA 10533 Query 181502 CAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACT 181561 |||||| || ||||| || || |||||||| ||||| || |||||||| | ||||| || Sbjct 10534 CAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGACGGTTCCCT 10593 Query 181562 GTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAAC 181621 |||||||| ||||| |||| ||||| || ||| | || | || || || |||| Sbjct 10594 ATTCAGTGCTATGCATGGTTGCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAA 10653 Query 181622 TGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGC 181681 ||| || ||| | ||||||| ||||| ||||| ||||| || || || ||||| || Sbjct 10654 TGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGC 10713 Query 181682 CGCCCACGGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTC 181741 || || ||||| ||||| || ||||| |||||||||||| |||||||| || ||||| Sbjct 10714 TGCTCATGGTTATTTTGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTC 10773 Query 181742 ACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGT 181801 | || |||||||| || || ||||||||||| || ||||||||||| || | || | Sbjct 10774 TTTACATTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTAT 10833 Query 181802 AAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGACA 181861 ||||| ||||| || ||| | ||||| ||||| |||||||| ||| | | || | || Sbjct 10834 CAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCA 10893 Query 181862 AGGACGTGTCCTCAACACCTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGT 181921 ||| | ||| | || |||||||| | | | || ||||| || || |||||||| Sbjct 10894 AGGTCATGTAATTAATACCTGGGCTAATATTATTAATCGTGCTAACCTTGGTATGGAAGT 10953 Query 181922 CATGCACGAGCGCAACGCGCACAACTTCCCGCTTGA 181957 ||||| || || || || || || ||||| || || Sbjct 10954 TATGCATGAACGTAATGCTCATAATTTCCCTCTAGA 10989 >seq9596 Length=34882 Score = 176 bits (194), Expect = 6e-39 Identities = 202/269 (75%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 183091 GGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGG 183150 ||||||| ||| |||||| |||||||| || ||||||||||| ||||| || || | | Sbjct 5356 GGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCG 5415 Query 183151 GTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTT-GCTCTTAATCTTCGTGCTTATGAT 183209 || | ||| | | || || ||| | | | ||| ||||| || || || || ||||| Sbjct 5416 GTTTATGGATGAGTGCTCTT-GGAGTAGTCGACTTGGCTCTGAACCTACGCGCCTATGAC 5474 Query 183210 TTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACAAAG 183269 || || ||| || || | ||||| ||||||||||| || |||||||||||||| || Sbjct 5475 TTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCAAA 5534 Query 183270 AACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCTGCCGATCAACCACATGAA 183329 || || ||| | |||||||| | ||||||||| |||| || ||||| || |||||| Sbjct 5535 AATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 5594 Query 183330 AACTTCATCTTCCCTGAAGAAGTTCTACC 183358 ||| | || |||||||| || |||||||| Sbjct 5595 AACCTTATATTCCCTGAGGAGGTTCTACC 5623 >seq388 Length=54843 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 182900 CCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCA 182959 ||| || ||||||||||||||||| ||| || |||||| || || || |||||| || Sbjct 28339 CCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGTTGCTCTTCTATGTGCTACTCA 28280 Query 182960 TGGTGTCACAGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTA 183015 ||||| || ||||||||||| || |||||||| || | ||||| ||||||| Sbjct 28279 TGGTGCAACTGTAGAGAATACTTTAGTTGAAGATGATGATAATGCAAATACATTTA 28224 >seq5685 Length=160749 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 181734 TCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCA 181793 || ||||| | || |||||||| || |||||| |||| || || ||||||||||| Sbjct 78495 TCTCGTTCTTTACATTTCTTCCTTATGGCTTGGCCTATAGTAGGTATTTGGTTCACCGCT 78554 Query 181794 CTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCTATCCTC 181853 | || | | ||| ||||| || ||| | ||||| ||||| |||||||| || | | Sbjct 78555 TTAGGTATCAACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTT 78614 Query 181854 GACGGACAAGGACGTGTCCTCAACACCTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGC 181913 || | ||||| |||| | || |||| || || | | || ||||| || || Sbjct 78615 GATAGTCAAGGTTGTGTAATTAATACCTAGGTTGATATTATTAATCGTGCTAACCTTGGT 78674 Query 181914 ATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCTTGA 181957 | |||||| |||| || || || || || || ||||| || || Sbjct 78675 ACGGAAGTTATGCGTGAACGTAATGCTCATAATTTCCCTCTAGA 78718 >seq4685 Length=19895 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 181422 GGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATG 181481 ||||||| ||| ||| | | ||||| ||||| || |||||||| ||||||| | || Sbjct 6887 GGTCAAGAAAGTTTTTCTAATGGTATGCCTCTTGGAATTTCTGGTACTTTCAACTTCGTG 6828 Query 181482 CTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGT 181530 |||| ||||| | ||||||||||| || ||||| || || ||||||| Sbjct 6827 ATTGTATTCCAGGTTGAGCACAACATCCTTATGCACCCATTTCACATGT 6779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614309092695680