Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq5990 533 2e-146 seq40156 450 2e-121 seq9596 118 2e-21 seq5685 118 2e-21 >seq5990 Length=34798 Score = 533 bits (590), Expect = 2e-146 Identities = 693/953 (73%), Gaps = 4/953 (0%) Strand=Plus/Plus Query 174500 TCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACTGTATG 174559 ||||||| | || ||||| |||||| | ||||| ||||| || || |||||||| | || Sbjct 10045 TCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTG 10103 Query 174560 T-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAACCAG 174618 | || ||||| |||||| | | | |||| |||||||| || || || || |||||||| | Sbjct 10104 TATTTATTATTGCTTTCATTGCTACTCCTCCAGTGGATATTGATGGTATTCGTGAACCTG 10163 Query 174619 TAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAA 174678 | |||| || || | || ||||| || || || |||||||| || |||||| ||| Sbjct 10164 TTTCTGGATCTCTACTTTACGGAAATAATATTATTTCTGGTGCCATTATTCCTACTTCTG 10223 Query 174679 ACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTCT 174738 || || ||| | ||||| |||||||| |||||||| | | | || |||||| | | Sbjct 10224 CAGCTATAGGTTTTCACTTTTACCCAATATGGGAAGCTGTTTCCGTTGATGAATGGTTAT 10283 Query 174739 ACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCCTATA 174798 |||| || ||||||| | ||| |||| | |||||| | ||||| | |||| Sbjct 10284 ACAATGGCGGTCCTTATAAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATA 10343 Query 174799 TGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCAT 174858 |||| | |||||||||||| || ||| |||||||| | |||||||| ||| |||| Sbjct 10344 TGGGTCATGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGCTGTTGCAT 10403 Query 174859 ACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTT 174918 | || || |||||||| | || | || || ||| | | ||||| | |||||||| Sbjct 10404 ATTCAGCTCCAGTTGCTGATGCAACTGCTGTTTTCTTGATATATCCCATTGGTCAAGGAA 10463 Query 174919 CATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCC 174978 || || |||| ||||| | || || ||||| || ||||||| |||| | || |||| Sbjct 10464 GCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCC 10523 Query 174979 AAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCG 175038 | || || || |||||| | |||||||| || |||||||| || || || ||||| |||| Sbjct 10524 AGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCG 10583 Query 175039 GTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTG-TCCGTGAG 175097 ||||| | ||| || |||||||||| |||| || || | ||| || | || Sbjct 10584 ACGGTTCCCTATTCAGTGCTATGCATGGTT-GCTTGGTAACTTCTAGTTTGATCAGGGAA 10642 Query 175098 ACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACCTAT 175157 || || |||| ||| || ||| | ||||||| ||||| ||||| ||||| || ||| Sbjct 10643 ACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTAT 10702 Query 175158 AACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAAC 175217 || ||||| || || ||||| || || || || ||||| |||||||| ||| |||||| Sbjct 10703 AATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATTTTCCAATATGCTAGTTTCAAC 10762 Query 175218 AACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACC 175277 || || || || | || |||||| |||| || ||||| || || |||||||||||||| Sbjct 10763 AATTCTCGTTCTTTACATTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACT 10822 Query 175278 GCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTT 175337 || | ||| | ||| ||||| |||||| | ||||||||||| |||||||| ||||| Sbjct 10823 GCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTA 10882 Query 175338 ATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTT 175397 | || | |||||| ||| | || |||||||| || || |||| | ||| ||| Sbjct 10883 GTTGATAGTCAAGGTCATGTAATTAATACCTGGGCTAATATTATTAATCGTGCTAACCTT 10942 Query 175398 GGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGATTTGGC 175450 || |||||||| |||||||| | ||||| || || ||||| ||||| || || Sbjct 10943 GGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACTTAGC 10995 >seq40156 Length=57058 Score = 450 bits (498), Expect = 2e-121 Identities = 709/1010 (70%), Gaps = 4/1010 (0%) Strand=Plus/Plus Query 175853 TGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATT 175912 ||||||| |||| |||||| | | || || | || | ||| | || ||||| || | Sbjct 5368 TGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCT 5427 Query 175913 ACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGT 175972 | | || |||| ||||||| | || | || || ||| |||| || ||||| ||||| Sbjct 5428 ATTGCTCTTTCCTTGTGCTTATTTCGCGTTAGGAGGTTGGTTTACAGGTACAACCTTTGT 5487 Query 175973 CACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGG-TGCTAACTTTCTCA 176031 || ||||| || ||||| | || ||||||| | || || ||| ||||| | | Sbjct 5488 AACTTCATGGTATACACATGGATTGGCGAGTTCCTATTTGGAAGGCTGC-AACTTCTTAA 5546 Query 176032 CAGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTC 176091 | ||||| || || ||||||||| || | | | || ||| | | |||| ||||||| Sbjct 5547 CCGCGGCAGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGGTC 5606 Query 176092 CTGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTG 176151 | ||| | || || || || || ||| ||| | || || || ||| | ||||||| Sbjct 5607 CAGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTG 5666 Query 176152 CTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGAC 176211 |||||||||| || |||| || || || |||||| | ||||| |||||||| || || Sbjct 5667 CTCTCCACGGCGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGAT 5726 Query 176212 TCATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCA 176271 || | || || || || || || |||||| || ||| || ||||| ||||| Sbjct 5727 CTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTT 5786 Query 176272 GTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTG 176331 ||| || || | || || |||||||| ||| ||||||||||| ||| ||||||| Sbjct 5787 CTGTATTCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTG 5846 Query 176332 TGGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACC 176391 | ||||| || ||| ||||| | | ||| | || || || || || |||||| |||||| Sbjct 5847 TCGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACC 5906 Query 176392 CCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATG 176451 | || ||||||||||| ||||| ||| || | || | || || |||| || || |||| Sbjct 5907 CATTTCATATGATGGGGGTTGCGGGTGTATTGGGCGCTGCCCTTCTATGCGCTATTCATG 5966 Query 176452 GCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGT 176511 | | ||| || |||||||| ||| ||||||||| || || || ||| ||| | Sbjct 5967 GTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCCGTGCTT 6026 Query 176512 TCGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGC 176571 | | | || || | |||||| || ||||| ||||| || || |||||||| ||||| | Sbjct 6027 TTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCC 6086 Query 176572 AAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCC 176631 ||||||| |||||||| ||| ||||| |||||| | || ||||||||||| ||||| | Sbjct 6087 AAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTAC 6146 Query 176632 CTGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTT-GCTCTTAATCTTCGT 176690 | || | ||| | ||| | | |||| | | | ||||| ||||| || || || Sbjct 6147 CAGTAACCGGTTTATGGATGAGTGCTCTTGG-AGTAGTCGGCTTGGCTCTGAACCTACGC 6205 Query 176691 GCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTC 176750 || ||||| || || || || || | ||||| ||||||||||| ||||| || ||| Sbjct 6206 GCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTC 6265 Query 176751 TACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAA 176810 ||||| || || || ||| | || ||||| | | || |||||||| || ||||| Sbjct 6266 TACACCAAAAATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAG 6325 Query 176811 CCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860 || ||||| || ||||||| || || |||||||| | || ||||| Sbjct 6326 CCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGC 6375 >seq9596 Length=34882 Score = 118 bits (130), Expect = 2e-21 Identities = 189/269 (70%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 176581 GGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATGG 176640 ||||||| ||| ||||| |||||| | || ||||||||||| ||||| || || | | Sbjct 5356 GGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCG 5415 Query 176641 GTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTG-CTCTTAATCTTCGTGCTTATGAT 176699 || | ||| | | |||| | | | | |||| |||| || || || || ||||| Sbjct 5416 GTTTATGGATGAGTGCTCTTGGAGT-AGTCGACTTGGCTCTGAACCTACGCGCCTATGAC 5474 Query 176700 TTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTACACAAAG 176759 || || || || || | ||||| ||||||||||| ||||| || |||||||| || Sbjct 5475 TTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCAAA 5534 Query 176760 AACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAACCACATGAG 176819 || || ||| | || ||||| | | || |||||||| || ||||| || ||||| Sbjct 5535 AATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 5594 Query 176820 TCATTTGTATTCCCAGAAGAAGTTCTACC 176848 || ||||||| || || |||||||| Sbjct 5595 AACCTTATATTCCCTGAGGAGGTTCTACC 5623 >seq5685 Length=160749 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 175248 GCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCACAATGGCATTCAAC 175307 || ||||| | || ||||| ||||||||||| | ||| | ||| ||||| |||||| Sbjct 78522 GCTTGGCCTATAGTAGGTATTTGGTTCACCGCTTTAGGTATCAACACTATGGCTTTCAAC 78581 Query 175308 CTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGTAGAGTATTGAACACC 175367 | ||||||||||| |||||||| || || | || | |||||| | ||| | || ||| Sbjct 78582 TTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTTGTGTAATTAATACC 78641 Query 175368 TGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTAATGCATGAGAGAAATGCA 175427 | || ||| || |||| | ||| ||||| | |||||| |||| ||| | ||||| Sbjct 78642 TAGGTTGATATTATTAATCGTGCTAACCTTGGTACGGAAGTTATGCGTGAACGTAATGCT 78701 Query 175428 CACAACTTCCCACTAGATTTGGC 175450 || || ||||| ||||| || || Sbjct 78702 CATAATTTCCCTCTAGACTTAGC 78724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729563211837280