Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq5990 518 4e-142 seq40156 477 1e-129 seq9596 143 3e-29 seq5685 89.7 6e-13 seq388 84.2 3e-11 >seq5990 Length=34798 Score = 518 bits (574), Expect = 4e-142 Identities = 678/936 (72%), Gaps = 2/936 (0%) Strand=Plus/Plus Query 177891 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGT 177949 || ||||| || || ||||||| || || | ||| | |||||| ||||| || || | Sbjct 10055 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTAT 10113 Query 177950 CGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTC 178009 || ||| | ||| |||| || ||||| || || || || |||||||| || |||| || Sbjct 10114 TGCTTTCATTGCTACTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 10173 Query 178010 ACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGG 178069 || | || || || || || || |||||||| || |||| |||| || || || Sbjct 10174 TCTACTTTACGGAAATAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGG 10233 Query 178070 TCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGG 178129 | ||||||| || || || |||||||| | || ||||||| ||| | || || || || Sbjct 10234 TTTTCACTTTTACCCAATATGGGAAGCTGTTTCCGTTGATGAATGGTTATACAATGGCGG 10293 Query 178130 TCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGA 178189 ||||| | || | || | |||||| | ||||| | | || ||||| | ||| Sbjct 10294 TCCTTATAAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGA 10353 Query 178190 GTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCC 178249 |||||||||| | |||| ||||||||||||| ||||| ||| ||||| || ||||| Sbjct 10354 GTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCC 10413 Query 178250 AGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGA 178309 ||| || | ||| | || || ||| || | ||||| | |||||||| |||||||| Sbjct 10414 AGTTGCTGATGCAACTGCTGTTTTCTTGATATATCCCATTGGTCAAGGAAGCTTTTCTGA 10473 Query 178310 CGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACA 178369 || ||||| || || || |||||||| ||||||| |||| |||| ||||| || || || Sbjct 10474 CGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCA 10533 Query 178370 CAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACT 178429 |||||| || |||||||| || |||||||| ||||| || |||||||||| ||||| || Sbjct 10534 CAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGACGGTTCCCT 10593 Query 178430 GTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAAC 178489 |||||||| ||||| |||| ||||| || ||| | | | ||||| || |||| Sbjct 10594 ATTCAGTGCTATGCATGGTTGCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAA 10653 Query 178490 AGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGC 178549 ||||| ||| | ||||| | ||||| ||||| ||||| || || || ||||| || Sbjct 10654 TGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGC 10713 Query 178550 AGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTC 178609 || ||||| || || || || ||||| |||||||||||| |||||||| || ||||| Sbjct 10714 TGCTCATGGTTATTTTGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTC 10773 Query 178610 ACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGT 178669 | || |||||||| || || ||||||||||| || ||||||||||| || | || | Sbjct 10774 TTTACATTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTAT 10833 Query 178670 AAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACA 178729 ||||| ||||| || ||| | ||||| ||||| |||||||| || | | || | || Sbjct 10834 CAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCA 10893 Query 178730 AGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGT 178789 ||| | ||| | || || ||||| | | | || ||||| || || |||||||| Sbjct 10894 AGGTCATGTAATTAATACCTGGGCTAATATTATTAATCGTGCTAACCTTGGTATGGAAGT 10953 Query 178790 CATGCACGAGCGCAACGCGCACAACTTCCCGCTTGA 178825 ||||| || || || || || || ||||| || || Sbjct 10954 TATGCATGAACGTAATGCTCATAATTTCCCTCTAGA 10989 >seq40156 Length=57058 Score = 477 bits (528), Expect = 1e-129 Identities = 705/991 (71%), Gaps = 6/991 (1%) Strand=Plus/Plus Query 179233 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179292 |||| |||||| | |||| || || || ||||| |||||||| || || | || Sbjct 5376 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCT 5435 Query 179293 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179352 |||| ||||||| | || | || |||||| |||| || ||| | ||||| || | Sbjct 5436 TTCCTTGTGCTTATTTCGCGTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 5495 Query 179353 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTCTTACGGCAGCT 179411 |||| || || || | || ||||||||| | || || ||| ||||| | || || || Sbjct 5496 GGTATACACATGGATTGGCGAGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCGGCA 5554 Query 179412 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 179471 || || || |||||| || | | | || ||| | | |||| |||||||| || | Sbjct 5555 GTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGGTCCAGAAGCA 5614 Query 179472 CAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCAC 179531 || || |||| || ||||| ||| | || || || |||| ||| || ||||||||| Sbjct 5615 CAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCAC 5674 Query 179532 GGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTGG 179590 || || |||| || || ||||||||| | | ||||||||||||||||| ||| | Sbjct 5675 GGCGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAA 5734 Query 179591 TATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTT 179650 | | ||||||| ||||| || || || |||| ||| |||||||| || || ||| || Sbjct 5735 TTGC-GACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATT 5793 Query 179651 CCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGC 179710 ||| || ||||| | || ||||| |||||| || ||||| ||||||||||| || Sbjct 5794 CCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTCGCAGC 5853 Query 179711 GATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCA 179770 || || | ||| | || || | || || || || || ||||| | ||||| || || Sbjct 5854 TATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCA 5913 Query 179771 TATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTAC 179830 ||||||||| ||||| ||| || | || | || || || | ||||| ||||| | ||| Sbjct 5914 TATGATGGGGGTTGCGGGTGTATTGGGCGCTGCCCTTCTATGCGCTATTCATGGTGCTAC 5973 Query 179831 TGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTC 179890 ||||| ||||| || | ||||||||| || |||||||| || || ||| | | Sbjct 5974 CGTAGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCCGTGCTTTTAACCC 6033 Query 179891 GACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTT 179950 || || | ||||| |||||||| |||||||| || |||||||| ||||| || ||||| Sbjct 6034 AACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTT 6093 Query 179951 CGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTAT 180010 || |||| ||||| || || || ||| | ||||| || ||||| ||||| || || | Sbjct 6094 TGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 6153 Query 180011 GGGTCTATGGACATCCTCTATTGGCATTATTGGTCTT-GCTCTCAACCTTCGTGCTTACG 180069 ||| |||||| || |||| | || | | ||| ||||| ||||| || || || | Sbjct 6154 CGGTTTATGGATGAGTGCTCTTGG-AGTAGTCGGCTTGGCTCTGAACCTACGCGCCTATG 6212 Query 180070 ATTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCA 180129 | ||||| |||||| ||| | ||||| |||||||| || |||||||| |||||||||| Sbjct 6213 ACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCA 6272 Query 180130 AGAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTTGATCAACCACATG 180189 | || |||||| | |||||||| | ||||| ||| |||| | ||||| || |||| Sbjct 6273 AAAATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATG 6332 Query 180190 AGTCATTCGTATTCCCAGAAGAAGTTCTGCC 180220 | | ||||||| || || ||||| || Sbjct 6333 AAAACCTTATATTCCCTGAGGAGGTTCTACC 6363 >seq9596 Length=34882 Score = 143 bits (158), Expect = 3e-29 Identities = 193/266 (73%), Gaps = 2/266 (1%) Strand=Plus/Plus Query 179956 TTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTC 180015 |||| ||||| || || || ||| | ||||| || ||||| ||||| || || | ||| Sbjct 5359 TTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTT 5418 Query 180016 TATGGACATCCTCTATTGGCATTATTGGTCTTG-CTCTCAACCTTCGTGCTTACGATTTC 180074 |||||| || |||| | || | | |||| |||| ||||| || || || || ||| Sbjct 5419 TATGGATGAGTGCTCTTGG-AGTAGTCGACTTGGCTCTGAACCTACGCGCCTATGACTTC 5477 Query 180075 GTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAAGAAC 180134 || |||||| ||| | ||||| |||||||| || |||||||| ||||||||||| || Sbjct 5478 GTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCAAAAAT 5537 Query 180135 ATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTTGATCAACCACATGAGTCA 180194 |||||| | |||||||| | ||||| ||| |||| | ||||| || ||||| Sbjct 5538 ATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAAC 5597 Query 180195 TTCGTATTCCCAGAAGAAGTTCTGCC 180220 | ||||||| || || ||||| || Sbjct 5598 CTTATATTCCCTGAGGAGGTTCTACC 5623 >seq5685 Length=160749 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 178602 TCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCA 178661 || ||||| | || |||||||| || |||||| |||| || || ||||||||||| Sbjct 78495 TCTCGTTCTTTACATTTCTTCCTTATGGCTTGGCCTATAGTAGGTATTTGGTTCACCGCT 78554 Query 178662 CTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTC 178721 | || | | ||| ||||| || ||| | ||||| ||||| |||||||| ||| | | Sbjct 78555 TTAGGTATCAACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTT 78614 Query 178722 GACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGC 178781 || | ||||| |||| | || || | || || | | || ||||| || || Sbjct 78615 GATAGTCAAGGTTGTGTAATTAATACCTAGGTTGATATTATTAATCGTGCTAACCTTGGT 78674 Query 178782 ATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCTTGA 178825 | |||||| |||| || || || || || || ||||| || || Sbjct 78675 ACGGAAGTTATGCGTGAACGTAATGCTCATAATTTCCCTCTAGA 78718 >seq388 Length=54843 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 179762 CCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCA 179821 ||| || ||||||||||||||||| ||| || | || | || || || |||||| || Sbjct 28339 CCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGTTGCTCTTCTATGTGCTACTCA 28280 Query 179822 TGGAGTTACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGG 179880 ||| | |||||||||||||| || |||||||| || | |||||||| |||| || Sbjct 28279 TGGTGCAACTGTAGAGAATACTTTAGTTGAAGATGATGATAATGCAAATACATTTAGGG 28221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605705413481280