Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq5990 547 8e-151 seq40156 508 7e-139 seq9596 167 3e-36 seq5685 120 4e-22 seq4685 105 8e-18 >seq5990 Length=34798 Score = 547 bits (606), Expect = 8e-151 Identities = 697/952 (73%), Gaps = 8/952 (1%) Strand=Plus/Plus Query 178901 TTGGTTGGTTCGGTGTGCTGATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATC 178959 |||| ||||| ||||| ||||||| ||||| || | | |||||| ||||| || || Sbjct 10053 TTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATT 10111 Query 178960 GTTGCTTTCGTAGCAGCACCTCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGT 179019 |||||||| | || | ||||| || |||||||| || || |||||||| || |||| Sbjct 10112 ATTGCTTTCATTGCTACTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGA 10171 Query 179020 TCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATT 179079 || || | || ||||| || || || |||||||| || | || | ||| || || Sbjct 10172 TCTCTACTTTACGGAAATAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATA 10231 Query 179080 GGTCTACACTTCTACCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGT 179139 ||| | ||||| ||||| || |||||||| | || | ||||| ||| | || || || Sbjct 10232 GGTTTTCACTTTTACCCAATATGGGAAGCTGTTTCCGTTGATGAATGGTTATACAATGGC 10291 Query 179140 GGTCCTTTCCAACTGGTAGTCTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGT 179199 ||||||| | || | || | |||||| | | || | | |||||||| | | Sbjct 10292 GGTCCTTATAAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCAT 10351 Query 179200 GAGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCA 179259 |||||||||||| || ||||||||||||||| || ||||| ||||||||| || || Sbjct 10352 GAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCT 10411 Query 179260 CCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCT 179319 ||||| |||| ||| | ||| || ||| | | ||||| | |||||||| || ||| Sbjct 10412 CCAGTTGCTGATGCAACTGCTGTTTTCTTGATATATCCCATTGGTCAAGGAAGCTTTTCT 10471 Query 179320 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 179379 || | ||||||||| || || ||||||||||| |||| |||| |||||||||| || || Sbjct 10472 GACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAG 10531 Query 179380 CACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCT 179439 |||||||||||||||||||| || || ||| | ||||| ||||| ||||||| || || Sbjct 10532 CACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGACGGTTCC 10591 Query 179440 CTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGA 179498 || ||| ||||||||| || | | || |||| || | ||| || | ||||| || || Sbjct 10592 CTATTCAGTGCTATGCATGGTTGCTTGGTAACTT-CTAGTTTGATCAGGGAAACCACAGA 10650 Query 179499 GACAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGT 179558 | || || ||| | ||||| | ||||| ||||| ||||| || ||||| ||||| Sbjct 10651 AAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGT 10710 Query 179559 CGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACG 179618 || || ||||| || || || || ||||| ||||||||||| || ||||| || || Sbjct 10711 AGCTGCTCATGGTTATTTTGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCG 10770 Query 179619 CTCTTTGCACTTCTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGG 179678 ||||| || |||||||| || || ||||| || || || ||||||||||||||| | | Sbjct 10771 TTCTTTACATTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAG- 10829 Query 179679 CGTGTCA--ACCATGGCGTTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGAC 179736 || ||| || ||||| |||||| | || |||||||| |||||||| || | |||| Sbjct 10830 -GTATCAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGAT 10888 Query 179737 GGTCAAGGACGTGTCCTTAACACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATG 179796 ||||||| | ||| |||| || ||||| | | | || ||||| | |||||| Sbjct 10889 AGTCAAGGTCATGTAATTAATACCTGGGCTAATATTATTAATCGTGCTAACCTTGGTATG 10948 Query 179797 GAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTG 179848 |||||||||||||| ||||| || || || ||||| || ||| | ||| ||| Sbjct 10949 GAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 11000 >seq40156 Length=57058 Score = 508 bits (562), Expect = 7e-139 Identities = 705/982 (72%), Gaps = 4/982 (0%) Strand=Plus/Plus Query 180051 GACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTCTTCCCACTGCTTATCTTGCC 180110 ||||| || || ||||| || ||||| || ||| | || |||| ||||||| | || Sbjct 5396 GACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCTTATTTCGCG 5455 Query 180111 ATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCACGGTCTTGCT 180170 | || |||||| |||| || ||| | ||||| || ||||| || || || | || Sbjct 5456 TTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACACATGGATTGGCG 5515 Query 180171 TCTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGC 180229 ||||||| | ||||| ||| ||||| | || || || || || || |||||| | Sbjct 5516 AGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCGGCAGTTTCTACTCCTGCTAATAG 5574 Query 180230 TATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAACGGTG 180289 | | | || ||| | | |||| |||||||| || | || || |||| || || Sbjct 5575 TTTAGCACACTCTTTGTTGTTACTATGGGGTCCAGAAGCACAAGGAGATTTTACTCGTTG 5634 Query 180290 GTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGG 180349 ||| ||| | || || || |||| ||| || ||||||||||| || |||| ||||| || Sbjct 5635 GTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGGCGCTTTCGGACTAATAGG 5694 Query 180350 ATTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCTTACAATGCTAT 180409 || ||| |||| || |||||||| || || | || | || ||||| ||||| || Sbjct 5695 TTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAAT 5754 Query 180410 TGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCA 180469 |||||||||| ||| || ||||| ||||| ||||| || || || || || ||||| Sbjct 5755 CGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCGCTAGGTCA 5814 Query 180470 GTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTT 180529 ||| ||||||||||||| ||| |||||| || ||||| || ||| ||||| | ||||| Sbjct 5815 GTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTCGCAGCTATATTTCGATTCATCCTCTT 5874 Query 180530 TCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTAT 180589 | | || || || || || ||||| | ||||| || ||||||||||| ||||| ||| | Sbjct 5875 TTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGGGTTGCGGGTGT 5934 Query 180590 ACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACACTGTATGA 180649 | | || | || | |||| || || ||||| | || || || || || | | ||| Sbjct 5935 ATTGGGCGCTGCCCTTCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTTGA 5994 Query 180650 AGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTTA 180709 |||||| || ||||| || || || ||| | |||| |||| ||| |||||||| Sbjct 5995 AGATGGTGATGGCGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCGGAAGAAACTTA 6054 Query 180710 CTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAA 180769 || |||||||| || |||||||| ||||| || ||||| || |||| ||||| || || Sbjct 6055 TTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAA 6114 Query 180770 GCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTAT 180829 || ||| | ||||| || ||||| ||||| || || | ||| |||||| || | Sbjct 6115 ACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCT 6174 Query 180830 TGGCATTATTGGTCTT-GCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCA 180888 ||| | || | | ||| ||||| ||||| || || || || ||||| ||| || ||| Sbjct 6175 TGG-AGTAGTCGGCTTGGCTCTGAACCTACGCGCCTATGACTTCGTTTCTCAGGAAATCC 6233 Query 180889 GAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAATGAAG 180948 | ||||| ||||||||||| || ||||||||||||||||| || || || || ||||||| Sbjct 6234 GTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCAAAAATATTCTTTTAAATGAAG 6293 Query 180949 GACTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAAAACTTCATCTTCCCTGAAG 181008 | | ||||| ||| |||| || ||||| || || |||||| | || |||||||| | Sbjct 6294 GCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 6353 Query 181009 AAGTTCTACCAAGAGGTAACGC 181030 | |||||||| | || ||||| Sbjct 6354 AGGTTCTACCCCGTGGAAACGC 6375 >seq9596 Length=34882 Score = 167 bits (184), Expect = 3e-36 Identities = 198/266 (74%), Gaps = 2/266 (1%) Strand=Plus/Plus Query 180754 TTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTC 180813 |||| ||||| || || || ||| | ||||| || ||||| ||||| || || | ||| Sbjct 5359 TTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTT 5418 Query 180814 TATGGACATCCTCTATTGGCATTATTGGTCTTG-CTCTCAACCTTCGTGCTTACGATTTC 180872 |||||| || |||| | || | | |||| |||| ||||| || || || || ||| Sbjct 5419 TATGGATGAGTGCTCTTGG-AGTAGTCGACTTGGCTCTGAACCTACGCGCCTATGACTTC 5477 Query 180873 GTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAAC 180932 || ||| || ||| | ||||| ||||||||||| || ||||||||||||||||| || Sbjct 5478 GTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCAAAAAT 5537 Query 180933 ATCCTATTGAATGAAGGACTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAAAAC 180992 || || || |||||||| | ||||| ||| |||| || ||||| || || |||||| Sbjct 5538 ATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAAC 5597 Query 180993 TTCATCTTCCCTGAAGAAGTTCTACC 181018 | || |||||||| || |||||||| Sbjct 5598 CTTATATTCCCTGAGGAGGTTCTACC 5623 >seq5685 Length=160749 Score = 120 bits (132), Expect = 4e-22 Identities = 170/237 (72%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 179614 TCACGCTCTTTGCACTTCTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCT 179673 || || ||||| || ||||||||| || ||||| | || || || |||||||| ||| Sbjct 78495 TCTCGTTCTTTACATTTCTTCCTTATGGCTTGGCCTATAGTAGGTATTTGGTTCACCGCT 78554 Query 179674 CTTGGCGTGTCAACC--ATGGCGTTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCC 179731 | || | ||||| ||||| |||||| | || |||||||| |||||||| ||| | Sbjct 78555 TTAGG--TATCAACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAG 78612 Query 179732 TTGACGGTCAAGGACGTGTCCTTAACACATGGGCGGACGTATTGAACCGTGCAGGTTTGG 179791 |||| ||||||| |||| |||| || | || || | | || ||||| | | Sbjct 78613 TTGATAGTCAAGGTTGTGTAATTAATACCTAGGTTGATATTATTAATCGTGCTAACCTTG 78672 Query 179792 GTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTG 179848 ||| ||||||||||| ||| ||||| || || || ||||| || ||| | ||| ||| Sbjct 78673 GTACGGAAGTTATGCGTGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 78729 >seq4685 Length=19895 Score = 105 bits (116), Expect = 8e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 179302 GGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATG 179361 ||||||| ||| ||| ||| |||||||||||| || ||||||||||| |||| | || Sbjct 6887 GGTCAAGAAAGTTTTTCTAATGGTATGCCTCTTGGAATTTCTGGTACTTTCAACTTCGTG 6828 Query 179362 CTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATG 179409 |||||||||| | || |||||||||||||||||||| || || ||| Sbjct 6827 ATTGTATTCCAGGTTGAGCACAACATCCTTATGCACCCATTTCACATG 6780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610023245057280