Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq6693 120 3e-22 seq3733 102 7e-17 seq2326 102 7e-17 seq762 102 7e-17 seq5462 98.7 8e-16 seq5374 98.7 8e-16 seq5335 93.3 4e-14 seq2332 93.3 4e-14 >seq6693 Length=64523 Score = 120 bits (132), Expect = 3e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || || || ||||||||| || | ||| || | |||||||||||||| || Sbjct 41943 GTGGACTCCTTCTGGATGTTGTAGTCGGCTAAGGTTCGGC-CATCTTCGAGCTGTTTCCC 42001 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| |||| | ||||||||| ||||| || | ||||| || || ||||||| || Sbjct 42002 TGCGAAAATCAAACGCTGTTGGTCCGGTGGGATCCCCTCCTTGTCTTGGATCTTGGCCTT 42061 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||||| || ||||| ||||| ||||| | || ||||| || || Sbjct 42062 GACATTGTCGATGGTGTCTGAGGACTCAACCTCTAGGGTTATGGTCTTCCCCGTTAGGGT 42121 Query 27230 TTTCACAAAGATTTGCATAGCTGCT 27254 |||||| ||||| ||||| | |||| Sbjct 42122 TTTCACGAAGATCTGCATGGTTGCT 42146 >seq3733 Length=159728 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||||||||| | |||| || | || | || || ||||| ||||||||||||||| Sbjct 153573 TGCCTCCGCGGAGTCGCAGAACGAGGTGAAGAGTGGACTCTTTCTGAATATTGTAGTCGG 153632 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | || ||||||| | ||| || |||||| | || | ||||| ||||| |||| Sbjct 153633 CGAGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATCAATCGCTGCTGATCGGGCG 153692 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||||| |||| | | || | ||||| | | || | Sbjct 153693 GGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCCA 153752 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || | || || | ||||| |||||||||||||| ||||| ||||| Sbjct 153753 CCTCCAAGGTGATGGTCTTGCCGGTCAGAGTTTTCACGAAGATCTGCAT 153801 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || ||| || | || | ||| || ||||| || || ||||||||| Sbjct 62977 TGCCTCCACGGAGCCTCAACACGAGGTGGAGCGTTGACTCTTTCTGGATGTTGTAGTCGG 63036 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | || |||| || | |||||||||||| | ||||| | ||| || ||||| | Sbjct 63037 CGAGGGTACGACCGTCCTCCAATTGTTTACCGGCGAAGATGAGCCTCTGCTGGTCCGGGG 63096 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||||| || | | | |||| ||||| | | || | Sbjct 63097 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCTATGGTGTCGGAGCTCTCCA 63156 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | ||| || || || |||||||| ||||| ||||| Sbjct 63157 CCTCCAGGGTGATGGTTTTTCCGGTTAGGGTTTTCACGAAGATCTGCAT 63205 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || ||| || | || | ||| || ||||| || || ||||| ||| Sbjct 111849 TGCCTCCACGGAGCCTCAACACGAGGTGGAGCGTTGACTCTTTCTGGATGTTGTAATCGG 111908 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | || |||| || | |||||||||||| | ||||| ||||| || ||||| | Sbjct 111909 CGAGGGTACGACCGTCCTCCAATTGTTTACCGGCGAAGATGAGCCGCTGCTGGTCCGGGG 111968 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||||| || | | | |||| ||||| | | || | Sbjct 111969 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCTATGGTGTCGGAGCTCTCCA 112028 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | ||| || || || |||||||| ||||| ||||| Sbjct 112029 CCTCCAGGGTGATGGTTTTTCCAGTTAGGGTTTTCACGAAGATCTGCAT 112077 >seq2326 Length=95029 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 |||||||| | || | |||||||| | ||||| ||||| ||||| || ||||| || Sbjct 85240 CCTCCGCGAAGCCTGAGAACCAAATGAAGAGTAGACTCTTTCTGAATGTTATAGTCAGCC 85181 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | || || | ||||| |||||||| || ||| | || || | |||||| || || || Sbjct 85180 AAAGTCCTGC-CATCTTCAAGCTGTTTTCCAGCGAATATCAGCCTCTGTTGGTCTGGTGG 85122 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||| |||||||| || || || | | || | ||| || | | ||||| Sbjct 85121 AATACCTTCTTTATCCTGAATTTTTGCCTTAACATTGTCAATAGTATCAGAGCTCTCAAC 85062 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| |||| ||||| || ||||| || |||||||||||||| Sbjct 85061 CTCAAGAGTAATAGTCTTGCCAGTAAGAGTCTTTACAAAGATTTGCAT 85014 >seq762 Length=331234 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || ||||| || || |||||| || |||| | |||||| Sbjct 300447 ACCAAGTGAAGTGTGGACTCCTTTTGGATGTTATAGTCGGCCAAAGTGCGACCATCTTCG 300388 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || || |||||||| | || | | ||| ||||| || || | |||||| || || | Sbjct 300387 AGTTGCTTACCGGCAAAGATCAACCTCTGCTGATCTGGTGGGATACCCTCCTTGTCTTGG 300328 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| ||| | | || | |||||||| | ||| || || || || || | ||| Sbjct 300327 ATCTTAGCTTTGACATTATCAATAGTGTCTGAGCTTTCGACCTCGAGGGTGATGGTCTTG 300268 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||||||||| || |||||||| ||||| Sbjct 300267 CCCGTCAGAGTCTTAACAAAGATCTGCAT 300239 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || ||||| || |||||||| | | |||| | ||||| ||||| || ||| Sbjct 300663 GTGGACTCCTTTTGGATGTTGTAGTCTGCGAGGGTGCGACCATCTTCAAGCTGCTTGCCG 300604 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || | | ||| || || || || | |||||| || || |||||| ||| Sbjct 300603 GCAAAGATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGGATCTTAGCTTTA 300544 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | |||| ||||||| | ||||||||| | |||||| | || || || || ||| Sbjct 300543 ACATTATCTATGGTGTCTGAGCTTTCAACTTCCAAAGTTATGGTCTTCCCAGTAAGGGTT 300484 Query 27231 TTCACAAAGATTTGCATA 27248 || ||||||||||||||| Sbjct 300483 TTAACAAAGATTTGCATA 300466 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || ||||| || ||||||||| || || |||| | |||||||| |||||||| Sbjct 316877 GTGGATTCCTTTTGTATGTTGTAGTCGG-CAAGTGTGCGACCATCTTCGAGTTGTTTACC 316819 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | || | | ||| || || || || | |||||| || || || ||| ||| Sbjct 316818 GGCAAAGATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGAATTTTGGCTTT 316759 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | | || | ||||| | | |||||||| | ||| || | |||||| |||| || Sbjct 316758 GACGTTATCAATGGTGTCAGAGCTCTCAACTTCCAAAGTAATTGTTTTGCCAGTCAAGGT 316699 Query 27230 TTTCACAAAGATTTGCAT 27247 |||||||| |||||||| Sbjct 316698 CTTCACAAAAATTTGCAT 316681 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || || ||||| |||| ||||| || | || || || |||||||||||||| || ||| Sbjct 317363 CCACCACGCAAACGCAGCACCAAGTGCAGGGTTGACTCCTTTTGAATATTGTAATCAGCT 317304 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | | | | ||||| | ||| || || || |||| || | |||||| ||||| || Sbjct 317303 -AAGGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCCGGTGG 317245 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||| || || |||||| ||| | | || | ||| |||| ||||| Sbjct 317244 GATACCCTCCTTGTCTTGGATCTTAGCTTTAACATTATCGATAGTATCTGAACTCTCAAC 317185 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | ||| || | |||||| |||| || || ||||| |||||||| Sbjct 317184 CTCCAAAGTAATTGTTTTGCCAGTCAAGGTCTTAACAAAAATTTGCAT 317137 >seq5462 Length=105758 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||||||||| | |||| || | || | || || ||||| ||||||||||||||| Sbjct 6550 TGCCTCCGCGGAGTCGCAGAACGAGGTGAAGAGTGGACTCTTTCTGAATATTGTAGTCGG 6491 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | || ||||||| | ||| || |||||| | || | ||||| ||||| || | Sbjct 6490 CGAGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATCAATCGCTGCTGATCGGGAG 6431 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||||| |||| | | || | ||||| | | || | Sbjct 6430 GGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCCA 6371 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || | || || | ||||| |||||||||||||| ||||| ||||| Sbjct 6370 CCTCCAAGGTGATGGTCTTGCCGGTCAGAGTTTTCACGAAGATCTGCAT 6322 >seq5374 Length=100071 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | |||| |||| |||||||| || ||| Sbjct 30050 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCG 29991 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| | ||| || ||||| || | || || || || ||||||| || Sbjct 29990 GCGAAGATGAGCCTCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTG 29931 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||||| | || || || ||||| || | ||||| || || ||| Sbjct 29930 ACGTTGTCGATGGTGTCTGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGTAAGGGTT 29871 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||||||||| Sbjct 29870 TTCACGAAGATTTGCAT 29854 >seq5335 Length=19063 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 ||||| || | || | |||||||| | ||||| ||||| || ||||| ||||| || Sbjct 7744 CCTCCACGAAGCCTTAGAACCAAATGAAGAGTAGACTCTTTCTGGATATTATAGTCAGCC 7803 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | || || | || || |||||||| || ||| | || || | |||||| ||||| || Sbjct 7804 AAAGTCCTGCCC-TCCTCCAGCTGTTTTCCAGCGAATATAAGCCTCTGTTGGTCCGGTGG 7862 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||| || ||||| || || ||| | | | || | || || | | ||||| Sbjct 7863 AATACCTTCCTTATCCTGAATTTTTGCTTTGACGTTGTCAATTGTATCAGAGCTCTCAAC 7922 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| |||| ||||| || || || || |||||||||||||| Sbjct 7923 CTCGAGAGTAATAGTCTTGCCAGTGAGGGTCTTTACAAAGATTTGCAT 7970 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 || |||||||| ||||| || || | |||| | ||||| ||||| || || || | Sbjct 7324 TCCTTTTGAATGTTGTAATCAGCCAGGGTGCGGCCATCTTCAAGCTGCTTTCCAGCAAAG 7383 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 ||||| | ||| ||||| || || | |||||| || || ||||| ||||| | | Sbjct 7384 ATGAGCCTCTGCTGATCTGGTGGGATACCCTCCTTGTCCTGAATCTTAGCTTTCACGTTA 7443 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | || || | | || || || ||||| || | || || ||||||||||||||| Sbjct 7444 TCGATGGTATCGGAGCTCTCCACCTCAAGAGTGATTGTCTTCCCAGTCAGAGTTTTCACA 7503 Query 27237 AAGATTTGCATA 27248 || || |||||| Sbjct 7504 AAAATCTGCATA 7515 >seq2332 Length=86198 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 ||||| || | || | |||||||| | ||||| ||||| ||||| || ||||| || Sbjct 74685 CCTCCACGAAGCCTGAGAACCAAATGAAGAGTAGACTCTTTCTGAATGTTATAGTCAGCC 74626 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | || || | ||||| |||||||| || ||| | || || | |||||| || || || Sbjct 74625 AAAGTCCTGC-CATCTTCAAGCTGTTTTCCAGCGAATATCAGCCTCTGTTGGTCTGGTGG 74567 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||| |||||||| || || || | | || | ||| || | | || || Sbjct 74566 AATACCTTCTTTATCCTGAATTTTTGCCTTAACATTGTCAATAGTATCAGAGCTCTCGAC 74507 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| |||| ||||| || ||||| || |||||||||||||| Sbjct 74506 CTCAAGAGTAATAGTCTTGCCAGTAAGAGTCTTTACAAAGATTTGCAT 74459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424726436573472