Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4895 91.5 2e-13 >seq4895 Length=78305 Score = 91.5 bits (100), Expect = 2e-13 Identities = 240/365 (66%), Gaps = 6/365 (2%) Strand=Plus/Minus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 |||||||| || || | || | ||| || || || || | | || || || ||| Sbjct 72630 TCAAAACGTCCAGGCCTCAGTAAGGCAGAGTCCAGAATGTCAGCCCTGTTGGTTGCTGCA 72571 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 || || | |||||||| | | ||||| |||||||| || || | | || |||| Sbjct 72570 ATCACAATGATGCCAGTGTTACCTTCAAAACCATCCATTTCTGTCAAAAGCTGGTTAAGG 72511 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGTTGCTTGCCCACC 11629 || |||||||| |||||||| || |||| |||| | | |||| || || Sbjct 72510 GTCTGTTCTCTTTCATCATTCCCTCC---ACCAATTCCAGTTCCTCTTTGCCGTCCAACG 72454 Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 |||||||| ||||||| || ||||| || || ||| || || | | || ||| Sbjct 72453 GCATCAATTTCATCAACAAATACAATGCAAGGAGCATTCTCCTTTGCCTTCTTGAAAAGA 72394 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCAC 11749 || || || | |||||| ||||| ||||||||||| ||||| | || | ||| Sbjct 72393 TCACGGACTCGAGAGGCACCAACACCGACAAACATCTCAACAAACTCTGAACCTGAGATA 72334 Query 11750 TGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTA 11809 || ||||| ||| | |||||| || || || ||| || || ||||| || || Sbjct 72333 GAGAAAAATGGAACACCAGCTTCACCAGCAATTGCCTTGGCTAGCAGAGTCTTCCCAGTT 72274 Query 11810 CCTGG 11814 || || Sbjct 72273 CCAGG 72269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627716759337600