Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq5871 89.7 6e-13 seq4895 87.8 2e-12 >seq5871 Length=81834 Score = 89.7 bits (98), Expect = 6e-13 Identities = 190/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| |||||||||||||||||||| ||||| || ||||| || | ||||||||| || Sbjct 371 AAATCCATCCATCTCAGTCAAGAGCTGATTAATAGTTTGCTCCCTCTCATCATTCCCA-- 314 Query 14212 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | | | || || | | ||| | || || || ||||| ||||| || || || || Sbjct 313 CCTCCAAGCCCTGCCCCTCTCTGCCTCCCCACTGCATCAATCTCATCAATAAACACAATG 254 Query 14270 CATGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || || || ||| || || || || | || | ||||||| ||| || || || Sbjct 253 CA-GGGTGCTTTCGACTTTGCCTTCTCGAACAAGTCCCTCACTCTCGAGGCCCCAACTCC 195 Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACC 14388 |||||||| |||||||| | | || | ||| || || || ||| | ||| || Sbjct 194 CACAAACAATTCCACAAACTCCGAAGCAGCACAAGAGAAAAACGGCACGCCGGCTTCTCC 135 Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || | |||| || | ||||||||||| || || || Sbjct 134 GGCCACTGCTCTAGCCAATAGGGTCTTCCCTGTACCGGG 96 >seq4895 Length=78305 Score = 87.8 bits (96), Expect = 2e-12 Identities = 246/370 (66%), Gaps = 16/370 (4%) Strand=Plus/Minus Query 14066 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 14125 ||||| || || || | || | ||| ||| || || ||| | ||| || || || Sbjct 72630 TCAAAACGTCCAGGCCTCAGTAAGGCAGAGTCCAGAATGTCAGCCCTGTTGGTTGCTGCA 72571 Query 14126 ATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 14182 || |||| |||||| || |||| ||||| |||||||| || ||||| || || || Sbjct 72570 ATCACAATGATGCCAGT---GTTACCTTCAAAACCATCCATTTCTGTCAAAAGCTGGTTA 72514 Query 14183 ATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA---CCCGCACTGCGTTGCTTACCG 14239 | ||| ||||| | |||||||||| | |||| || | | | |||| || Sbjct 72513 AGGGTCTGTTCTCTTTCATCATTCCCTCC---ACCAATTCCAGTTCCTCTTTGCCGTCCA 72457 Query 14240 ACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAA-CTTCAAA 14298 ||||| ||||||||||| | || || || || || ||| || || ||| ||| Sbjct 72456 ACGGCATCAATTTCATCAACAAATACAATGCAAGGAGCATTCTCCTTTGCCTTCTTGAAA 72397 Query 14299 GATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGA 14358 | ||| || |||| |||||| ||||| ||||||||||| ||||| | | | | Sbjct 72396 -AGATCACGGACTCGAGAGGCACCAACACCGACAAACATCTCAACAAACTCTGAACCTG- 72339 Query 14359 ACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCC 14417 | || | || || || || || |||||| || || || ||| || || ||||||| Sbjct 72338 AGATAGAGAAAAATGGAACACCAGCTTCACCAGCAATTGCCTTGGCTAGCAGAGTCTTCC 72279 Query 14418 CCGTCCCTGG 14427 | || || || Sbjct 72278 CAGTTCCAGG 72269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618124776451360