Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4895 140 4e-28 seq12080 98.7 1e-15 seq5871 87.8 2e-12 >seq4895 Length=78305 Score = 140 bits (154), Expect = 4e-28 Identities = 284/415 (68%), Gaps = 10/415 (2%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 || || || ||| | | || || || || || |||| || || || | | |||||| Sbjct 72600 TCCAGAATGTCAGCCCTGTTGGTTGCTGCAATCACAATGATGCCAGTGTTACCTTCAAAA 72541 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 |||||||| ||||||||||| ||||||| || ||||| | |||||||||| || | Sbjct 72540 CCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTCCCT---CCA 72484 Query 9677 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 ||| |||| | | |||| ||| ||||||||||| ||||||| || || ||||| Sbjct 72483 CCAATTCCAGTTCCTCTTTGCCGTCCAACGGCATCAATTTCATCAACAAATACAATGCAA 72424 Query 9734 GGTTGATTTTCGCGAG-CGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 9792 || ||| || | | ||| ||| ||||| || || || ||| || ||||| || Sbjct 72423 GGAGCATTCTCCTTTGCCTTCTTGAAA-AGATCACGGACTCGAGAGGCACCAACACCGAC 72365 Query 9793 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9851 ||||||||| ||||| | || | | | || | || || || ||| || |||||| | Sbjct 72364 AAACATCTCAACAAACTCTGAACCTG-AGATAGAGAAAAATGGAACACCAGCTTCACCAG 72306 Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 9911 |||| || ||| || |||||||| || || || || ||| || || | ||| Sbjct 72305 CAATTGCCTTGGCTAGCAGAGTCTTCCCAGTTCCAGGAGGACCGATAAGAAGAACCCCTT 72246 Query 9912 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 |||||| || ||| || || | | || ||||| | ||| ||||| ||||| Sbjct 72245 TTGGAATGCGAGCCCCAATTGCAGTGAACCTTTCAGGCTTCTTCAGAAACTCCAC 72191 >seq12080 Length=19512 Score = 98.7 bits (108), Expect = 1e-15 Identities = 180/262 (69%), Gaps = 5/262 (2%) Strand=Plus/Plus Query 94684 TATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGT 94743 ||||| ||||| || |||||||| | ||| || | || || | || ||||| || Sbjct 8273 TATATCAAGGACTCGGCCGAGAAGAACCGGCTGTTCCACGCGATGGAGACCGTTCCTTGC 8332 Query 94744 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATA-CAAAGTCGCGTTCCTTTGC 94802 | ||||| || || ||||| || |||| | || | || ||||| || Sbjct 8333 GTGGCGAAGAAGGCCGAGTGGGCCCTGCGGTGGATCGACGGCGGAGAATCGTTC----GC 8388 Query 94803 TGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGC 94862 ||| | ||| |||| || || || || || || || |||||||| || ||||||||| Sbjct 8389 GGAGAGGCTCATCGCCTTCGCTTGCGTCGAAGGCATTTTCTTCTCCGGAAGCTTCTGCGC 8448 Query 94863 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922 || | |||||| || ||||| || | ||||| || | ||||||||||||| | || Sbjct 8449 GATATTTTGGCTAAAAAAGCGCGGGTTAATGCCCGGGTTAACCTTCTCCAACGAGTTGAT 8508 Query 94923 CTCTCGTGACGAGGGACTCCAC 94944 ||| || ||||| || |||||| Sbjct 8509 CTCGCGAGACGAAGGTCTCCAC 8530 >seq5871 Length=81834 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/130 (75%), Gaps = 12/130 (9%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||| ||||| || || ||||||||||| |||| ||||||||| | Sbjct 371 AAATCCATCCATCTCAGTCAAGAGCTGATTAATAGTTTGCTCCCTCTCATCATTCCC--- 315 Query 9673 CATACCACC-AGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGAC 9726 ||| || ||| ||| | ||| | ||||| ||||||||||||||||| || || Sbjct 314 ---ACCTCCAAGCCCTGCCCCTCTCTGCCTCCCCACTGCATCAATCTCATCAATAAACAC 258 Query 9727 GATGCATGGT 9736 ||||| ||| Sbjct 257 AATGCAGGGT 248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582968032241440