Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq3205 87.8 8e-13 >seq3205 Length=116236 Score = 87.8 bits (96), Expect = 8e-13 Identities = 144/201 (72%), Gaps = 10/201 (5%) Strand=Plus/Plus Query 65087 CGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTC 65146 || || ||||| || |||||||| | | ||||| ||||| || || | | ||| Sbjct 51539 CGAGTGCCAAATTGGCCATTTGGTTGAAGCAGGTTAATGTTGTTGGAGCCCACATAATCT 51598 Query 65147 TGAGCCATTCCGATAAT--TGCT-GCATTTAAACTCGCTTCACCGTGATGATATCCTGAA 65203 || ||||||||||| || |||| ||| | |||| || ||||||||||| ||||| Sbjct 51599 TGTGCCATTCCGATGATGGTGCTCGCA---AGACTCTGCTCGCCGTGATGATAAGCTGAA 51655 Query 65204 TGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAA-TTCTTTTT 65262 || ||||| ||||| ||| ||| || ||||||||| |||| ||| ||| ||| | || Sbjct 51656 TGCTCAGACACATAACCAGAAAACTGGGCAACTTTTGCTTCC-TTGACAAAGTTCCTCTT 51714 Query 65263 --AAATGCAGAATACAATATT 65281 || |||||| | ||| || Sbjct 51715 GAAAGAGCAGAAAAGAATTTT 51735 Score = 82.4 bits (90), Expect = 4e-11 Identities = 117/162 (72%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 65087 CGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTC 65146 || || ||||| || |||||||| | | ||||| ||||| || || | | | | Sbjct 29934 CGAGTGCCAAATTGGCCATTTGGTTGAAGCAGGTTAATGTTGTTGGAGCCCACATAGTCT 29993 Query 65147 TGAGCCATTCCGATAATTG--CT-GCATTTAAACTCGCTTCACCGTGATGATATCCTGAA 65203 || ||||||||||| |||| || ||| | |||| ||||| |||||||| ||||| Sbjct 29994 TGTGCCATTCCGATGATTGTACTCGCA---AGACTCTGCTCACCATGATGATAAGCTGAA 30050 Query 65204 TGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCC 65245 || ||||| ||||| ||| ||| || ||||||||| |||| Sbjct 30051 TGCTCAGACACATAACCAGAAAACTGGGCAACTTTTGCTTCC 30092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235564657913400