Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq12080 174 2e-38 seq13333 84.2 2e-11 >seq12080 Length=19512 Score = 174 bits (192), Expect = 2e-38 Identities = 565/864 (65%), Gaps = 14/864 (2%) Strand=Plus/Plus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 ||||| || | ||||||||| | |||| |||| ||||| || | || |||||| Sbjct 7973 TTTCCAATTCAGTACCCGGAGATATGGGAGATGTACAAGAAGGCCGAGGCCTCGTTCTGG 8032 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGAC 59681 ||| ||||||| | || ||| |||| ||| | | ||||| || || | | ||| Sbjct 8033 ACCGCCGAGGAGGTCGATCTCTCCGGCGACGTACGTCACTGGGAAAACCTAACCGATGAC 8092 Query 59682 GAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATG 59741 ||| ||| ||||||| || || ||||||||||| || || || || || || Sbjct 8093 GAGAGGCACTTCATCACTCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTTTTG 8152 Query 59742 GAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTAC 59801 || ||| | | || || ||||| |||||| || | ||||| || | ||||| Sbjct 8153 GAGAATCTGGCGGGGAGGTTCATGAAGGAGGTCCAGGTTTCGGAGGCTCGCGCTTTCTAT 8212 Query 59802 GCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAG 59861 | | ||| | |||| ||||||||||| | |||| ||| || |||| | Sbjct 8213 GGCTTCCAGATTGCGATCGAGAACATCCACTCCGAAATGTACAGTCTCTTGCTCGAGACC 8272 Query 59862 TTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGAC-GTCCCCCGC 59920 | ||||||| ||| |||||| | ||||||| || || ||||| || || || Sbjct 8273 TATATCAAGGACTCGGCCGAGAAGAACCGGCTGTTCCACGCGATGGAGACCGTTCCTTGC 8332 Query 59921 AGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCATTTGCAC 59979 || | || || || |||||| ||| |||||| || | |||| ||| || || Sbjct 8333 -GTGGCGAAGAAGGCCGAGTGGGCCCTGCGGTGGATCGACGGC-GGAGAATCGTTCGCGG 8390 Query 59980 AACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTA 60039 | | ||||| || || || ||||| ||||| || |||||||| || ||||| || | Sbjct 8391 AGAGGCTCATCGCCTTCGCTTGCGTCGAAGGCATTTTCTTCTCCGGAAGCTTCTGCGCGA 8450 Query 60040 TTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTT 60099 | || ||||| |||||||| || | ||||| || | | |||||||||||| |||| | Sbjct 8451 TATTTTGGCTAAAAAAGCGCGGGTTAATGCCCGGGTTAACCTTCTCCAACGAGTTGATCT 8510 Query 60100 CCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCTATTG-GA 60157 | || ||||| || ||||| || || || ||| | |||||| ||| || ||| | Sbjct 8511 CGCGAGACGAAGGTCTCCACTGCGATTTCGC-GTGCCTGCTCTA--CAC-TCTCTTGCGC 8566 Query 60158 AAAATGCCCTTCCAAGGATATTCACAAG---ATTGTTCAGTGGGCTTGTGAAGTGGAGAG 60214 || | | | | |||| ||| || || | || || | ||||| Sbjct 8567 AAGAAG-CTGAGCGAGGAGCGCGTGAAGGCTATCGTCCGCGACGCGGTGGATATAGAGAG 8625 Query 60215 CGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGAC 60274 ||||| | || ||||| || ||| | | || ||| ||| | |||| Sbjct 8626 GGAGTTTGTGTGCGACGCGCTGCCCTGCGCGTTGGTTGGGATGAACGGCGATCTGATGAG 8685 Query 60275 GCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGACCAATTTA 60334 |||||||| ||||||| ||||| | || ||| | ||| || || ||| || Sbjct 8686 CCAGTACATCGAGTTTGTGGCGGATAGGCTTTTGGGCGCGTTGGGGTGTGGCAAAATCTA 8745 Query 60335 CGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTT 60394 || || | ||||| || || |||||||| || |||||| |||| |||||||| || Sbjct 8746 CGATGTTCAGAACCCATTTGATTGGATGGAACTGATTTCGTTGCAAGGAAAGACCAATTT 8805 Query 60395 CTTTGAGAAGCGGGTCGGGGATTA 60418 |||||||||| | || ||||| || Sbjct 8806 CTTTGAGAAGAGAGTTGGGGAGTA 8829 >seq13333 Length=25420 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 |||||||| |||||||| || || || || || | | ||| || || ||||||||| Sbjct 24166 GATGCCAGATTGCACACAGCAGTTTCTGTTGGACTTGTATACTCAATTATCTCTGTGCAC 24225 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 ||||| || || |||||||| || | |||| ||| ||||||||| |||||| | ||| Sbjct 24226 AAATTTGAAGATTTGATGGTACCCAGATTCTGCTGATTGCTCTTCCTGTTACAAGTATCC 24285 Query 79177 TTGTAGCAC 79185 | | || || Sbjct 24286 TGGAAGAAC 24294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548249467976640