Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq12080 127 2e-24 seq1242 91.5 2e-13 seq10977 89.7 6e-13 seq10835 89.7 6e-13 seq31572 86.0 7e-12 seq2121 86.0 7e-12 seq7743 82.4 8e-11 >seq12080 Length=19512 Score = 127 bits (140), Expect = 2e-24 Identities = 558/866 (64%), Gaps = 18/866 (2%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || || | ||| ||||| || |||||||| |||| |||||| || |||||| Sbjct 8829 TACTCCCCAACTCTCTTCTCAAAGAAATTGGTCTTTCCTTGCAACGAAATCAGTTCCATC 8770 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAG-GCTTCTCCCCAAACTGTGCCATGAGGCG 74581 || || || ||||||| || |||| || || | |||||| | ||| || | Sbjct 8769 CAATCAAATGGGTTCTGAACATCGTAGATTTTGCCACACCCCAACGCGC-CCAAAAGCCT 8711 Query 74582 ATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGCA 74641 |||||||||||| | |||||||| |||| | | | ||| || | | ||| Sbjct 8710 ATCCGCCACAAACTCGATGTACTGGCTCATCAGATCGCCGTTCATCCCAACCAACGCGCA 8651 Query 74642 CGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTTGTG 74701 ||||| || ||| | |||||| ||||| | || || |||| || | Sbjct 8650 GGGCAGCGCGTCGCACACAAACTCCCTCTCTATATCCACCGCGTCGCGGACGATAGCCTT 8591 Query 74702 AATGTCTTTGGAAGGGCA-CTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAAACTCC 74759 | | | | | || ||| | | || | ||| ||| ||| | |||| ||| | Sbjct 8590 CACG-CGCTCCTCGCTCAGCTTCTTGCGCAAGAGAGTGTAGAGCAGGCACGCGAAATCGC 8532 Query 74760 TGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGT 74819 | | || ||||| |||| ||||| || || || || | | || ||||| | Sbjct 8531 AGTGGAGA-CCTTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTTAACCCGGGCATTAAC 8473 Query 74820 CCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACA 74879 || ||||| || | |||||| || || |||||| || |||||| ||||||||||| Sbjct 8472 CCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAAATGCCTTCGACG 8413 Query 74880 CACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC-ATCCAAGTCTGAGC 74938 || || ||||||| || | | |||||||| | | || | ||| ||||| | | || Sbjct 8412 CAAGCGAAGGCGATGAGCCTCTCCGCGAACGATTC-TCCGCCGTCGATCCACCGCAGGGC 8354 Query 74939 CCATTCAGCTTTTCGTTTGAC-CGCAGGGA-CAGTATCGATCGCTTGGAAGAGGCTTGCC 74996 ||| || || || || | | |||| ||| | || || ||||| ||||| || | | Sbjct 8353 CCACTCGGCCTTC--TTCGCCACGCAAGGAACGGTCTCCATCGCGTGGAACAGCCGGTTC 8296 Query 74997 TTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATC 75056 ||||| | | ||||||| | || | || || |||| | || || || || Sbjct 8295 TTCTCGGCCGAGTCCTTGATATAGGTCTCGAGCAAGAGACTGTACATTTCGGAGTGGATG 8236 Query 75057 GACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTT 75116 |||| | |||| | | ||||||| || ||||| | || ||| || ||||| Sbjct 8235 TTCTCGATCGCAATCTGGAAGCCATAGAAAGCGCGAGCCTCCGAAACCTGGACCTCCTTC 8176 Query 75117 GAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGT 75176 || || | | |||||||| ||||||||||| ||||||||||| || || || Sbjct 8175 ATGAACCTCCCCGCCAGATTCTCCAAAACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGC 8116 Query 75177 ACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCC 75236 || |||| ||||| | ||| || || || || || ||||| | | ||| || Sbjct 8115 ACGTGAGTGATGAAGTGCCTCTCGTCATCGGTTAGGTTTTCCCAGTGACGTACGTCGCCG 8056 Query 75237 GCCAAATCAATCTCCTCGACCGTCCAGAA--ACTCCCAATC-GCCTTTTTGTACAAAGAC 75293 | | ||| | ||||||| | |||||||| | || || ||||| ||||||| | Sbjct 8055 GAGAGATCGACCTCCTCGGCGGTCCAGAACGAGGCC---TCGGCCTTCTTGTACATCTCC 7999 Query 75294 CACAAGTCAGGGTAATTGATTGGAAA 75319 || | || ||||| | |||||||| Sbjct 7998 CATATCTCCGGGTACTGAATTGGAAA 7973 >seq1242 Length=21307 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 16656 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 16597 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 16596 TGAGCTACGAAAGCA 16582 >seq10977 Length=11656 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 3252 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 3311 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 3312 TGAGCTACGAAAGC 3325 >seq10835 Length=21466 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 16003 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 15944 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 15943 TGAGCTACGAAAGC 15930 >seq31572 Length=1199 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 855 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 796 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 795 TGAGCTATGAAAGC 782 >seq2121 Length=255028 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 225544 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 225603 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 225604 TGAGCTATGAAAGC 225617 >seq7743 Length=31313 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 30509 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 30450 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 30449 TGAGCTATGAAAGCA 30435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546941324928800