Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq5990 511 6e-140 seq2319 136 5e-27 seq4685 114 2e-20 seq5685 109 7e-19 seq6232 105 8e-18 seq3690 87.8 2e-12 seq2753 86.0 8e-12 seq8046 82.4 9e-11 >seq5990 Length=34798 Score = 511 bits (566), Expect = 6e-140 Identities = 688/955 (72%), Gaps = 2/955 (0%) Strand=Plus/Plus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| |||| ||||||||||| | ||||| || | | || || | | ||| Sbjct 10047 TTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTA 10105 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| |||| || ||||| | || || || ||||| || |||||||| ||||| || Sbjct 10106 TTTATTATTGCTTTCATTGCTACTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTT 10165 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | ||||||||||| || ||||| || || || || || || | | || | || Sbjct 10166 TCTGGATCTCTACTTTACGGAAATAATATTATTTCTGGTGCCATTATTCCTACTTCTGCA 10225 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || || || | ||||| |||||||| |||||||| | | ||||| |||||| | ||| Sbjct 10226 GCTATAGGTTTTCACTTTTACCCAATATGGGAAGCTGTTTCCGTTGATGAATGGTTATAC 10285 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || | || |||| | |||||| | | ||| | | ||| ||| Sbjct 10286 AATGGCGGTCCTTATAAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 10345 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || | | ||||||||||||| | | ||||| ||||| |||||||| ||||||||| Sbjct 10346 GGTCATGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGCTGTTGCATAT 10405 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 || || ||||| ||| || | || |||||| | | ||||| | ||||||||| Sbjct 10406 TCAGCTCCAGTTGCTGATGCAACTGCTGTTTTCTTGATATATCCCATTGGTCAAGGAAGC 10465 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 || ||||| ||||||||||| || ||||| ||||| |||||||| ||| |||||||||| Sbjct 10466 TTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 10525 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 || ||||||||||| || ||||||||||| || ||| | || ||||| ||||| || | Sbjct 10526 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGAC 10585 Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACA 176745 || || || ||| || ||||| || | | || |||||| | | || || || Sbjct 10586 GGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACTTCTAGTTTGATCAGGGAAACC 10645 Query 176746 ACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAAC 176805 || ||||| ||||| ||| | ||||||| |||||| ||||| ||||| || || || Sbjct 10646 ACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAAT 10705 Query 176806 ATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAAC 176865 || |||||||| || ||||| ||||| || | || ||||| |||||| |||||| || Sbjct 10706 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATTTTCCAATATGCTAGTTTCAACAAT 10765 Query 176866 TCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCA 176925 || | | | || |||||||| || || | || || || | |||||||| ||||| Sbjct 10766 TCTCGTTCTTTACATTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCT 10825 Query 176926 ATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTA 176985 | ||| | |||| ||||| |||||| | || |||||||| |||||||| ||||| | Sbjct 10826 TTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 10885 Query 176986 GACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGT 177045 || | ||| | || ||| ||| |||| |||| |||| ||||| ||||||||| Sbjct 10886 GATAGTCAAGGTCATGTAATTAATACCTGGGCTAATATTATTAATCGTGCTAACCTTGGT 10945 Query 177046 ATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTG 177100 |||||||||||||| || ||||||||||| || ||||| || ||| | ||| ||| Sbjct 10946 ATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 11000 >seq2319 Length=126647 Score = 136 bits (150), Expect = 5e-27 Identities = 197/275 (72%), Gaps = 10/275 (4%) Strand=Plus/Plus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 ||||||||| | || |||||||| || ||| | || | ||||| | | |||| Sbjct 73186 ACCTGTAACTATTCAATATCCTTATGAAAAATTAATCACATCAGAACGTTTTTACGGTCA 73245 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 ||||||| |||||||| || || || || ||| | || ||||| ||||||||||| Sbjct 73246 AATACACTTCGAGTTTGATAAATGCATTGCTTGTAAAGTATGTGTTCATGTATGCCCTAT 73305 Query 19415 CAATCTACCAGTGGTGGATTGGGTGATG--AACAAACAGACAAAGAAGAAAGA---ACTT 19469 ||||||| || || ||||||| || ||| || | ||| |||||| | |||| Sbjct 73306 GGATCTACCTGTTGTTGATTGGGAACTGGAAACTAATATTCAA--AAGAAACATTTACTT 73363 Query 19470 AGAAATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGC 19529 |||||| || || || | | ||||| || || ||||| ||||| |||||||| Sbjct 73364 ---AATTATAGTATTGATTTCGAAATCTGTATATTTTGTGGTAATTGCGTTGAGTATTGT 73420 Query 19530 CCAACAAACTGTCTATCCATGACAGAAGAATATGA 19564 |||||||| ||| ||||||||| ||||||||||| Sbjct 73421 CCAACAAATTGTTTATCCATGATTGAAGAATATGA 73455 >seq4685 Length=19895 Score = 114 bits (126), Expect = 2e-20 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 176554 GGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATG 176613 ||||||| | ||| ||| |||||||||||||||| ||||| ||||| |||||||| || Sbjct 6887 GGTCAAGAAAGTTTTTCTAATGGTATGCCTCTTGGAATTTCTGGTACTTTCAACTTCGTG 6828 Query 176614 TTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCATATG 176661 |||||||||| | ||||||||||| || ||||||||||| || ||| Sbjct 6827 ATTGTATTCCAGGTTGAGCACAACATCCTTATGCACCCATTTCACATG 6780 >seq5685 Length=160749 Score = 109 bits (120), Expect = 7e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 176878 CACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGC 176937 || ||||||||| || | || | || | || ||||| || || | ||| | | Sbjct 78507 CATTTCTTCCTTATGGCTTGGCCTATAGTAGGTATTTGGTTCACCGCTTTAGGTATCAAC 78566 Query 176938 ACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGT 176997 || ||||| |||||| | || |||||||| |||||||| || || | || | ||| Sbjct 78567 ACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGT 78626 Query 176998 AAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATG 177057 || ||| ||| | || ||||| |||| ||||| |||||||||| |||||||||| Sbjct 78627 TGTGTAATTAATACCTAGGTTGATATTATTAATCGTGCTAACCTTGGTACGGAAGTTATG 78686 Query 177058 CACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTG 177100 | || ||||||||||| || ||||| || ||| | ||| ||| Sbjct 78687 CGTGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 78729 >seq6232 Length=104065 Score = 105 bits (116), Expect = 8e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| |||| || ||||| || || || || ||||| || |||||||| ||||| || Sbjct 82801 TTTATTATTGCTTTCATTGCTGCTCCTCCGGTGGATATTGATGGTATTCGTGAACCTGTT 82742 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | ||||||||||| || ||||| || || || || || || | | || | || Sbjct 82741 TCTGGATCTCTACTTTACGGAAATAATATTATTTCTGGTGCCATTATTCCTACTTCTGCA 82682 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || || || | ||||| |||||||| |||||||| | | ||||| |||||| | ||| Sbjct 82681 GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCTGGTTCCGTTGATGAATGGTTATAC 82622 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTC 176421 |||| || || || | || |||| | |||||| Sbjct 82621 AATGATGGTCCTTATGAGCTAATTGTTCTACACTTC 82586 >seq3690 Length=176667 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 177013 TGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCT 177072 |||| ||||| |||||| ||| ||||||||||||||||||||||| || |||||||| Sbjct 116815 TGGGCTGATATTATTAACCATGCTAACCTTGGTATGGAAGTTATGCATGAATGTAATGCT 116756 Query 177073 CACAACTTCCCACTTGACCTTGCTGCTG 177100 || || ||||| || ||| | ||| ||| Sbjct 116755 CATAATTTCCCTCTAGACTTAGCTTCTG 116728 >seq2753 Length=60576 Score = 86.0 bits (94), Expect = 8e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 177019 GATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAAC 177078 ||||| |||||| ||| ||||||||||||||||||||||| || |||||||||| || Sbjct 53403 GATATTATTAACCATGCTAACCTTGGTATGGAAGTTATGCATGAATGTAATGCTCATAAT 53344 Query 177079 TTCCCACTTGACCTTGCTGCTG 177100 ||||| || ||| | ||| ||| Sbjct 53343 TTCCCTCTAGACTTAGCTTCTG 53322 >seq8046 Length=121713 Score = 82.4 bits (90), Expect = 9e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 ||||||||| | || |||||||| || ||| | || | ||||| | | | |||| Sbjct 26248 ACCTGTAACTATTCAATATCCTTATGAAAAATTAATCACATCAGAACGTTTTTGCGGTCA 26307 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 ||||||| |||||||| || || || || ||| | || ||||| ||||||||||| Sbjct 26308 AATACACTTCGAGTTTGATAAATGCATTGCTTGTAAAGTATGTGTTCATGTATGCCCTAT 26367 Query 19415 CAATCTACCAGTGGTGGATTGGG 19437 ||||||| || || ||||||| Sbjct 26368 GGATCTACCTGTTGTTGATTGGG 26390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603191475985920