Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_029046.1 Length=50827 Score E Sequences producing significant alignments: (Bits) Value seq40156 82.4 2e-11 seq40154 82.4 2e-11 seq3427 80.6 9e-11 >seq40156 Length=57058 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| |||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 9650 CGGGGTAGAGCAGCTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 9591 Query 21210 CTGTCTCCGCAAC 21222 | ||||||||||| Sbjct 9590 CCGTCTCCGCAAC 9578 >seq40154 Length=1768 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| |||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 202 CGGGGTAGAGCAGCTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 143 Query 21210 CTGTCTCCGCAAC 21222 | ||||||||||| Sbjct 142 CCGTCTCCGCAAC 130 >seq3427 Length=94710 Score = 80.6 bits (88), Expect = 9e-11 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 21154 GTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATCCTGT 21213 |||||||| | |||||||||| ||||||||||| |||||| ||||||| ||||| || Sbjct 13071 GTAGAGCAACTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACAGGTTCAAATCCCGT 13130 Query 21214 CTCCGCAAC 21222 ||||||||| Sbjct 13131 CTCCGCAAC 13139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162447299642808