Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq5335 105 5e-18 seq2326 95.1 9e-15 seq3733 89.7 4e-13 seq2332 87.8 1e-12 seq762 86.0 4e-12 >seq5335 Length=19063 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| ||||||||||| || || ||||| | || || |||||| || Sbjct 8198 ATGCAGATATTTGTTAAAACTCTTACAGGAAAGACAATTACTTTGGAAGTTGAAAGCTCC 8139 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| |||||| |||||| ||||| |||||| |||| || | Sbjct 8138 GACACAATTGACAAT--GTCAAAGCGAAAATACAAGACAAGGAAGGTATTCCTCCAGATC 8081 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| ||||| || | || || | || | ||| | || |||| Sbjct 8080 AGCAGAGGCTGATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGAACATTGGCTGACTACA 8021 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || |||||| ||| ||||||||||| | || | ||||| || Sbjct 8020 ACATACAGAAAGAGTCCACCTTGCATTTGGTCCTCCGCCTTCGTGGTGG 7972 Score = 98.7 bits (108), Expect = 7e-16 Identities = 163/233 (70%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| |||||||||||||| || || || | || || || ||| | Sbjct 8654 ATGCAGATCTTTGTCAAAACTCTTACTGGAAAGACCATAACTCTCGAGGTTGAGAGCTCT 8595 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || |||||||| |||||| ||||||| ||||| ||||| | || | Sbjct 8594 GA-----TACAATCGATAATGTCAAAGCAAAAATACAGGACAAGGAAGGAATCCCACCAG 8540 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGAT 27963 | ||||| || | || ||||| |||||||| ||||| |||| || | |||| | ||| Sbjct 8539 ACCAGCAGAGGCTGATCTTTGCTGGAAAACAGTTGGAGGACGGTCGTACTCTTG-CTGAT 8481 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| ||||| || | || |||||| | |||||| | || || Sbjct 8480 TACAACATCCAGAAAGAATCAACCCTCCACTTGGTTCTTCGTTTGAGAGGTGG 8428 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 10/215 (5%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||||||||| |||||||| || || |||| || || ||| || Sbjct 7514 ATGCAGATTTTTGTGAAAACTCTGACTGGGAAGACAATCACTCTTGAGGTGGAGAGCTCC 7455 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || ||| |||| || ||| || || ||||| || ||| | || | Sbjct 7454 GA-----TACCATCGATAACGTGAAAGCTAAGATTCAGGACAAGGAGGGTATCCCACCAG 7400 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | || ||||| ||||| || | || || | |||| | || | |||| Sbjct 7399 ATCAGCAGAGGCTCATCTTTGCTGGAAAGCAGCTTGAAGATGGCCGCACCCTGGCTGATT 7340 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 ||||||| ||||| |||||||| ||||| | ||| Sbjct 7339 ACAACATTCAAAAGGAGAGCACACTGCATCTTGTT 7305 >seq2326 Length=95029 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/232 (69%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| |||||||| ||||| || || || |||| ||||| ||| | Sbjct 84330 ATGCAGATCTTTGTCAAAACTCTCACTGGAAAGACCATAACTCTTGAGGTCGAGAGCTCT 84389 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || |||||||| |||||| ||||||| ||||| || || | || | Sbjct 84390 GA-----TACAATCGATAATGTCAAAGCAAAAATACAGGACAAGGAGGGAATCCCACCAG 84444 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | || ||||| || ||||| ||||| || | || | ||| | |||| Sbjct 84445 ACCAGCAGAGGCTGATCTTTGCTGGCAAACAGTTGGAGGATGGTCGTACTTTGGCTGATT 84504 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||||| ||| | || || ||| | |||||| | || || Sbjct 84505 ACAACATCCAGAAAGAATCCACCCTCCACTTAGTTCTTCGTTTGAGAGGTGG 84556 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| ||||||||||| || || || || | || || |||||| | Sbjct 84786 ATGCAGATCTTTGTTAAAACTCTTACAGGAAAGACAATCACTTTGGAAGTTGAAAGCTCG 84845 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| |||||| || ||| ||||| || ||| | || || | Sbjct 84846 GACACAATTGATAAT--GTCAAAGCGAAGATACAAGACAAGGAGGGTATCCCTCCAGATC 84903 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| ||||| || | || || | || | ||| |||| |||| Sbjct 84904 AGCAGAGGCTGATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGGACATTGGCCGACTACA 84963 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| |||||| ||| ||||||||||| | || | ||||| || Sbjct 84964 ACATCCAGAAAGAGTCCACCTTGCATTTGGTCCTCCGCCTCCGTGGTGG 85012 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| || ||||||||||| || |||||| |||| || || ||| | Sbjct 85013 AATGCAAATCTTTGTAAAGACTCTTACTGGCAAGACTATTACTCTTGAGGTTGAGAGCTC 85072 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || ||||| || || |||||| || ||||||||| |||| || Sbjct 85073 TGATACTATTGACAAT--GTTAAGGCAAAAATTCAGGATAAAGAAGGTATTCCACCAGAC 85130 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || || | || || || |||||||| | || || | | | ||| | || || Sbjct 85131 CAACAGAGGCTGATATTCGCTGGAAAACAGCTTGAAGATGGCAGGACTTTGGCTGACTAT 85190 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 ||||| || |||||| ||| | ||||||||| Sbjct 85191 AACATTCAGAAAGAGTCTACTCTTCATTTGGTT 85223 >seq3733 Length=159728 Score = 89.7 bits (98), Expect = 4e-13 Identities = 139/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || || |||||||| || ||||| ||| || || | || || || ||| Sbjct 112080 AAGATGCAGATCTTCGTGAAAACCCTAACTGGAAAAACCATCACCCTGGAGGTGGAGAGC 112021 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||||| || |||| || || || || ||||| ||||| |||| || Sbjct 112020 TCCGACACCATAGACAAC--GTTAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGG 111963 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| ||| | || || ||||| ||||||||||| |||| || | | | |||||| Sbjct 111962 ACCAGCAGCGGCTCATCTTCGCCGGTAAACAATTGGAGGACGGTCGTACCCTCGCCGATT 111903 Query 27965 ACAACATCCAAAAAGAG 27981 |||||||||| |||||| Sbjct 111902 ACAACATCCAGAAAGAG 111886 >seq2332 Length=86198 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| ||||||||||| || || || || | || || |||||| | Sbjct 74231 ATGCAGATCTTTGTTAAAACTCTTACAGGAAAGACAATCACTTTGGAAGTTGAAAGCTCG 74290 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| |||||| || ||| ||||| || ||| | || || | Sbjct 74291 GACACAATTGATAAT--GTCAAAGCGAAGATACAAGACAAGGAGGGTATCCCTCCAGATC 74348 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| ||||| || | || || | || | ||| |||| |||| Sbjct 74349 AGCAGAGGCTGATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGGACATTGGCCGACTACA 74408 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| |||||| ||| ||||||||||| | || | ||||| || Sbjct 74409 ACATCCAGAAAGAGTCCACCTTGCATTTGGTCCTCCGCCTCCGTGGTGG 74457 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| || ||||||||||| || |||||| |||| ||||| ||| | Sbjct 74458 AATGCAAATCTTTGTAAAGACTCTTACTGGCAAGACTATTACTCTTGAGGTCGAGAGCTC 74517 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || ||||| || || |||||| || ||||||||| |||| || Sbjct 74518 TGATACTATTGACAAT--GTTAAGGCAAAAATTCAGGATAAAGAAGGTATTCCACCAGAC 74575 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || || | || || || |||||||| | || || | | | ||| | || || Sbjct 74576 CAACAGAGGCTGATATTCGCTGGAAAACAGCTTGAAGATGGCAGGACTTTGGCTGACTAT 74635 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 ||||| || |||||| ||| | ||||||||| Sbjct 74636 AACATTCAGAAAGAGTCTACTCTTCATTTGGTT 74668 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| |||||||| ||||| || || || | || ||||| ||| | Sbjct 73775 ATGCAGATCTTTGTCAAAACTCTCACTGGAAAGACCATAACTCTCGAGGTCGAGAGCTCT 73834 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| |||||| |||||| ||||| || || | || || | Sbjct 73835 GATACAATTGATAAT--GTCAAAGCAAAAATTCAGGACAAGGAGGGAATCCCACCAGACC 73892 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| || ||||| ||||| || | || | ||| | ||||||| Sbjct 73893 AGCAGAGGCTGATCTTTGCTGGCAAACAGTTGGAGGATGGTCGTACTTTGGCTGATTACA 73952 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| ||||| ||| | || || ||| | |||||| | || || Sbjct 73953 ACATCCAGAAAGAATCCACCCTCCACTTAGTTCTTCGTTTGAGAGGTGG 74001 >seq762 Length=331234 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||| || || | || || ||| || || | || || || ||| | Sbjct 300694 AATGCAAATTTTTGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTTGAGAGCTC 300753 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| |||||| || || |||||||| ||| | || ||| Sbjct 300754 TGATACTATTGATAAT--GTCAAAGCTAAGATCCAAGACAAAGAGGGTATCCCACCGGAC 300811 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || || | |||||||| || || || ||||| || | | | | ||| | |||||| Sbjct 300812 CAACAGAGGCTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGACCTTAGCTGATTAC 300871 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| ||||| ||| || |||| ||||| |||| |||||||| || Sbjct 300872 AACATTCAAAAGGAGTCAACCCTGCACTTGGTGCTGCGATTGCGTGGAGG 300921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355688240496612