Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq5462 100 2e-16 seq3733 96.9 3e-15 seq2332 96.9 3e-15 seq2326 96.9 3e-15 seq762 84.2 2e-11 >seq5462 Length=105758 Score = 100 bits (110), Expect = 2e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 ||||||| ||| || || || || || |||||||||||||| || || || |||| Sbjct 92144 AACACCAGATGCAGAGTCGATTCCTTCTGAATATTATAATCGGCGAGGGTGCGACCGTCC 92085 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 || | |||||| || || || || || | ||||||||| | ||| | || || ||||| Sbjct 92084 TCTAACTGTTTTCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGAATGCCTTCCTTGTCT 92025 Query 39193 ATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACT 39251 ||| || |||| ||| | | | || ||| |||||| |||| ||||| | Sbjct 92024 TGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAGGGTGATGGT 91966 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 |||||| || || ||||| || ||||| ||||||||| Sbjct 91965 TTTTCCGGTTAGGGTTTTCACGAAGATCTGCATCTTT 91929 >seq3733 Length=159728 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 ||||| | || ||||| |||||| || || || |||||||| || || || |||| Sbjct 111866 AACACGAGGTGGAGCGTTGACTCTTTCTGGATGTTGTAATCGGCGAGGGTACGACCGTCC 111925 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 || | ||||| || || || || || ||||||||||| | ||| | || || |||||| Sbjct 111926 TCCAATTGTTTACCGGCGAAGATGAGCCGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCC 111985 Query 39193 ATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACT 39251 ||| || | | | ||| | | | || ||| |||||| |||| ||||| | Sbjct 111986 TGGATCTT-GGCCTTAACGTTGTCTATGGTGTCGGAGCTCTCCACCTCCAGGGTGATGGT 112044 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 |||||| || || ||||| || ||||| ||||||||| Sbjct 112045 TTTTCCAGTTAGGGTTTTCACGAAGATCTGCATCTTT 112081 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 ||||||||||| || || || || || ||||||||||| || || || || |||| Sbjct 62766 AACACCAAATGCAGAGTCGATTCCTTCTGAATATTATAATCAGCGAGGGTCCGACCGTCC 62825 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTC 39191 || | |||||| || || || || || | |||||||| ||| ||| | || || ||||| Sbjct 62826 TCTAACTGTTTTCCGGCGAAGATGAGCCTCTGCTGGTCCGGAGGGATCCCT-TCCTTGTC 62884 Query 39192 CATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACT 39251 ||| ||| |||| | | | |||||| ||| || |||| |||||| | Sbjct 62885 TTGGATCTTCGCCTTGACATTATCGATGGTATCGGAGCTCTCTACCTCCAACGTGATCGT 62944 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || ||||| || ||||| ||||| Sbjct 62945 CTTCCCCGTTAGGGTTTTGACGAAGATCTGCAT 62977 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 ||||||| ||| || || || || || |||||||||||||| || || || |||| Sbjct 111638 AACACCAGATGCAGAGTCGATTCCTTCTGAATATTATAATCGGCGAGGGTGCGGCCGTCC 111697 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTC 39191 || | |||||| || || || || || | |||||||| ||| ||| | || || ||||| Sbjct 111698 TCTAACTGTTTTCCGGCGAAGATGAGCCTCTGCTGGTCCGGAGGGATCCCT-TCCTTGTC 111756 Query 39192 CATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACT 39251 ||| || |||| | | | |||||| ||| || |||| ||||| | Sbjct 111757 TTGGATCTTGGCCTTGACATTATCGATGGTATCGGAGCTCTCTACCTCCAAGGTGATCGT 111816 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||||||| || ||||| || ||||| ||||| Sbjct 111817 CTTTCCCGTTAGGGTTTTGACGAAGATCTGCAT 111849 >seq2332 Length=86198 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||||||||||| || ||||| || || || |||||||| | || |||||||| Sbjct 75346 ATGCAGGGTGCTCTCTTTCTGGATATTGTAGTCTGCGAGTGTTCGACCATCCTCAAGCTG 75287 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTT 39199 || |||||||| || || | |||||| || |||||| | | ||| |||||| ||| | Sbjct 75286 CTTTCCCGCAAAGATGAGCCTCTGCTGATCAGGTGGG-ATCCCCTCCTTGTCC-TGAATC 75229 Query 39200 TCTG-TTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCC 39258 | || || | | | | ||||| |||||| || | ||||| | || ||| Sbjct 75228 TTTGCCTTCACATTGTCGATGGTATCAGAACTCTCCACCTCAAGTGTGATTGTCTTGCCC 75169 Query 39259 GTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || |||||||| ||||| Sbjct 75168 GTCAGTGTCTTCACAAAGATCTGCAT 75143 >seq2326 Length=95029 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||||||||||| || ||||| || || || |||||||| | || |||||||| Sbjct 85901 ATGCAGGGTGCTCTCTTTCTGGATATTGTAGTCTGCGAGTGTTCGACCATCCTCAAGCTG 85842 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTT 39199 || |||||||| || || | |||||| || |||||| | | ||| |||||| ||| | Sbjct 85841 CTTTCCCGCAAAGATGAGCCTCTGCTGATCAGGTGGG-ATCCCCTCCTTGTCC-TGAATC 85784 Query 39200 TCTG-TTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCC 39258 | || ||| | | | | ||||| |||||| || | ||||| | || || Sbjct 85783 TTTGCTTTCACATTGTCGATGGTATCAGAACTCTCCACCTCAAGTGTGATTGTCTTGCCT 85724 Query 39259 GTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || |||||||| ||||| Sbjct 85723 GTCAGTGTCTTCACAAAGATCTGCAT 85698 >seq762 Length=331234 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| ||||| ||||| ||||| || || || | | | || |||||||||||||| ||||| Sbjct 317784 CTCCTTTTGGATATTGTAATCAGCCAGAGTCCTTCCATCTTCAAGCTGTTTGCCTGCAAA 317725 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCG 39211 ||||| | ||||||||| | ||| | | ||| |||||| ||| | | || ||| | Sbjct 317724 AATAAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCC-TGAATCTTTGCTTTCACAT 317666 Query 39212 TCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | ||||| ||| || |||| || || | || || |||| || |||| Sbjct 317665 TATCAATTGTATCAGAACTCTCAACCTCCAAAGTAATGGTCTTCCCTGTCAAGGTCTTAA 317606 Query 39272 CAAAGATTTGCAT 39284 |||| || ||||| Sbjct 317605 CAAAAATCTGCAT 317593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429335379846428