Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq762 96.9 3e-15 seq4898 84.2 2e-11 >seq762 Length=331234 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || || ||||| | | ||||| ||||| ||||| || ||||||||||||||||| || Sbjct 317363 CCACCACGCAAACGCAGCACCAAGTGCAGGGTTGACTCCTTTTGAATATTGTAATCAGCT 317304 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | || | ||||||||| || ||||| ||| | || ||||| |||||||| || Sbjct 317303 AAGGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCCGGTGGG 317244 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTT 101191 | || || ||||| || || ||| |||| | | || |||| | Sbjct 317243 ATACCCTCCTTGTCTTGGATCTTAGCTTTAACATTATCGATAGTATCTGAACTCTCAACC 317184 Query 101192 TCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 || | ||||| |||||||| ||||| || |||| ||||||||||||| Sbjct 317183 TCCAAAGTAATTGTTTTGCCAGTCAAGGTCTTAACAAAAATTTGCATT 317136 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 101035 GTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTG 101094 ||||| ||| || || ||||| ||||||||||| |||| ||| | |||||| | || Sbjct 317796 GTGCAGAGTAGACTCCTTTTGGATATTGTAATCAGCCAGAGTCCTTCCATCTTCAAGCTG 317737 Query 101095 TTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTT 101154 |||||| ||| | |||||||| || |||||| ||| | || || ||||| ||| || Sbjct 317736 TTTGCCTGCAAAAATAAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGAATCTT 317677 Query 101155 TTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCGT 101214 | |||||||| | | || || | | || | ||||| || || || || Sbjct 317676 TGCTTTCACATTATCAATTGTATCAGAACTCTCAACCTCCAAAGTAATGGTCTTCCCTGT 317617 Query 101215 CAATGTTTTAATAAAAATTTGCATT 101239 ||| || |||| |||||| |||||| Sbjct 317616 CAAGGTCTTAACAAAAATCTGCATT 317592 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||||| || | || || || || || ||||||||||| || | ||| | |||||| Sbjct 301132 CACCAGATGAAGGGTAGACTCCTTCTGGATATTGTAATCTGCAAGAGTCCTTCCATCTTC 301073 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 | || ||||| ||| ||||||||||||| |||||| || | ||||| ||||| Sbjct 301072 AAGCTGCTTGCCTGCAAATATAAGCCTTTGCTGGTCTGGTGGGATACCTTCCTTGTCTTG 301013 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACGGTAATAGTT 101206 || ||| ||||||| | | | || |||| | | || || | ||| || ||| Sbjct 301012 TATCTTTGCCTTCACATTGTCAATAGTATCTGAG--CTTTCAACCTCCAAGGTTATGGTT 300955 Query 101207 TTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 || || ||||| || || | |||||||||||| Sbjct 300954 TTCCCAGTCAAAGTCTTCACGAAAATTTGCATT 300922 >seq4898 Length=109433 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || || || | ||| || |||| ||| | ||||| || ||||| || |||||||| || Sbjct 54489 CCTCCCCGAAGTCTCAAAACCAGGTGAAGTGTTGACTCCTTTTGGATGTTGTAATCAGCA 54430 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | |||| |||||||||||| || || ||| | || ||||| ||||||||| ||| Sbjct 54429 AGAGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTCTGTTGGTCTGGGGGG 54370 Query 101132 ACGCCTTCTTTGTC 101145 | ||||| ||||| Sbjct 54369 ATACCTTCCTTGTC 54356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409460311492404