Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq12080 107 2e-18 >seq12080 Length=19512 Score = 107 bits (118), Expect = 2e-18 Identities = 373/576 (65%), Gaps = 7/576 (1%) Strand=Plus/Minus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAA 4606 ||||| ||||| || || | ||||||||||| || | |||| ||||| || || ||||| Sbjct 8544 CACGCGAAATCGCAGTGGAGACCTTCGTCTC-GCGAGATCAACTCGTTGGAGAAGGTTAA 8486 Query 4607 TCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAA 4666 ||||||||||| || | |||||| ||||||||||| ||| || || || ||||| Sbjct 8485 CCCGGGCATTAACCCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAA 8426 Query 4667 TATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTT 4726 |||||||| ||| || || || | | | | ||||||| || | | | Sbjct 8425 AATGCCTTCGACGCAAGCGAAGGCGATGAGCCTCTCCGCGAACGA---TTCTCCGCCGTC 8369 Query 4727 AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT 4786 ||||| | ||||| | || || ||| ||||| |||| || | || |||| Sbjct 8368 GATCCACCGCAGGGCCCACTCGGCCTTCTTCGCCACGCAAGGAACGGTCTCCATCGCGTG 8309 Query 4787 AAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACAT 4846 || | | || || | ||| | ||||| || || | | || || ||||| Sbjct 8308 GAACAGCCGGTTCTTCTCGGCCGAGTCCTTGATATAGGTCTCGAGCAAGAGACTGTACAT 8249 Query 4847 TTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTA-AAAGCATCTAGCTTCTGTTA 4905 ||| || || || || || || |||||||| || || || ||||| | ||| || | | Sbjct 8248 TTCGGAGTGGATGTTCTCGATCGCAATCTGGAAGCCATAGAAAGC-GCGAGCCTCCGAAA 8190 Query 4906 CTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTG 4965 | || || || || || || | | | || || || || ||||| ||| | Sbjct 8189 CCTGGACCTCCTTCATGAACCTCCCCGCCAGATTCTCCAAAACGATGCCGTCGGAGGCGG 8130 Query 4966 CAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGT 5025 | || || || | || |||| || |||| | |||||| | || |||| ||||| Sbjct 8129 CGAAGAAGGCGAGCACGTGAGTGATGAAGTGCCTCTCGTCATCGGTTAGGTTTTCCCAGT 8070 Query 5026 GGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTT 5085 | | | || | | ||| || || || | ||||| ||||| || || || || | Sbjct 8069 GACGTACGTCGCCGGAGAGATCGACCTCCTCGGCGGTCCAGAACGAGGCCTCGGCCTTCT 8010 Query 5086 TGTACATAGACCAAATATCAGGATACTGAATCGGAA 5121 ||||||| ||| || || || |||||||| |||| Sbjct 8009 TGTACATCTCCCATATCTCCGGGTACTGAATTGGAA 7974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426840601391948