Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq12080 131 2e-25 seq13333 91.5 2e-13 >seq12080 Length=19512 Score = 131 bits (144), Expect = 2e-25 Identities = 374/575 (65%), Gaps = 0/575 (0%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || ||||| || || |||||||| |||| || || ||||| || || || | Sbjct 8544 CACGCGAAATCGCAGTGGAGACCTTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTTAAC 8485 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 |||||||||| || || ||||| ||||||||||| || ||| ||| || ||||| Sbjct 8484 CCGGGCATTAACCCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAA 8425 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATC 48320 |||||||| ||| || || ||| | || ||||| || | || || || ||| Sbjct 8424 ATGCCTTCGACGCAAGCGAAGGCGATGAGCCTCTCCGCGAACGATTCTCCGCCGTCGATC 8365 Query 48321 CACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 48380 ||||| | ||||| || ||||||||| || ||||| | || || || || | || Sbjct 8364 CACCGCAGGGCCCACTCGGCCTTCTTCGCCACGCAAGGAACGGTCTCCATCGCGTGGAAC 8305 Query 48381 AGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCG 48440 || ||| || || || || | || || || | || ||||| ||||||||| Sbjct 8304 AGCCGGTTCTTCTCGGCCGAGTCCTTGATATAGGTCTCGAGCAAGAGACTGTACATTTCG 8245 Query 48441 GAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGT 48500 ||||| || || || || || ||||| || || || ||| | || || | | ||| Sbjct 8244 GAGTGGATGTTCTCGATCGCAATCTGGAAGCCATAGAAAGCGCGAGCCTCCGAAACCTGG 8185 Query 48501 ACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAA 48560 |||||| | || | | |||| |||||| || || || || || || || Sbjct 8184 ACCTCCTTCATGAACCTCCCCGCCAGATTCTCCAAAACGATGCCGTCGGAGGCGGCGAAG 8125 Query 48561 AATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTG 48620 || || | || || | || || | | |||| || || || | ||||| | Sbjct 8124 AAGGCGAGCACGTGAGTGATGAAGTGCCTCTCGTCATCGGTTAGGTTTTCCCAGTGACGT 8065 Query 48621 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATAC 48680 | || || | ||| || || || || ||||| || || ||||| || || || ||| Sbjct 8064 ACGTCGCCGGAGAGATCGACCTCCTCGGCGGTCCAGAACGAGGCCTCGGCCTTCTTGTAC 8005 Query 48681 ATATTCCATATATCACTGTATTGGATTGGGAAAAT 48715 || | |||||| || ||| || ||||| || || Sbjct 8004 ATCTCCCATATCTCCGGGTACTGAATTGGAAACAT 7970 >seq13333 Length=25420 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 ||||||||||||||| || || | ||||| | || |||||| ||| |||| || Sbjct 24558 CTCTCTTTCATATTGGGTGTACAATTTCTCAAAATTGTCACCCCAACAATCTGCCAAACC 24617 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATAA 78015 || | ||||| || || | ||||||||| || |||| | | || ||||| || ||| | Sbjct 24618 TGGAGACTCATTAGGACAAAACAATGACCATTCTCCAT-TGCTTTGAACTCTTTCCATGA 24676 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 78052 |||||||||| | ||| |||||| ||| ||||| || Sbjct 24677 AGAGATCAGGAACCCAAAGAGCATAAAACAGATCACG 24713 Score = 89.7 bits (98), Expect = 7e-13 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || ||||| | ||||| || || | ||| | || | | |||||||| ||| || Sbjct 25019 CCCCCTTGATCAACATATCGTGCAGTATCATTGAATACCCGTAGCATTGGAACAATGCCA 25078 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 |||||||| |||||||||||| ||||||||| || | || |||||||| | || Sbjct 25079 TTAGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCACGAATATTGTGAGCTGAG 25138 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGAT-ATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || |||||||| | || || | | || | ||| || ||| || || || || || Sbjct 25139 ACACCAATTCCTCCAG-CAGATTTGCTAATGATAGCACACTCTTTTAAAGTCTCATATAT 25197 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || || ||||| ||||| ||||| | ||| || || ||| Sbjct 25198 GCCTTCAATACTATCATCTTTCATGCACACAAGGAAGCAACTA 25240 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 77145 ACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATT 77204 ||||||||| |||||||||| ||||||||||| | | ||||||||||| | ||| Sbjct 22817 ACTCTACGACTGTAAATATTGGAAGTATATGGTTCAAAGCACTCATTGTTTCCAAGAATC 22876 Query 77205 TGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTT 77264 || ||| |||||||| |||||||| || | | | |||||| |||| | || Sbjct 22877 TGGCTAGTGGAAGCAGTCGGCATAGGAGCTATAAGAAGTGAATTTCTAGTACCA--TTTT 22934 Query 77265 CTGATTTTATCT--TTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAA 77322 ||| | |||| | ||| ||||||||||| ||||||| ||| ||| |||| | Sbjct 22935 TGGATATCATCTCCCTAAGAGCATTCCAATCCCACCGATCTGAGGGTGTCACACCCCACA 22994 Query 77323 GATCGTATTGTAGAATTCC 77341 || || |||||||| Sbjct 22995 TGTCTGGCTGAAGAATTCC 23013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694320110995840