Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq13333 116 5e-21 seq12080 113 6e-20 >seq13333 Length=25420 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||||| ||||| | ||| | || | | |||||||| |||||| Sbjct 25019 CCCCCTTGATCAACATATCGTGCAGTATCATTGAATACCCGTAGCATTGGAACAATGCCA 25078 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||||| |||||||||||| ||||||||| || ||||||||||| | || Sbjct 25079 TTAGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCACGAATATTGTGAGCTGAG 25138 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || ||| || | |||||| ||| || || ||||| ||| Sbjct 25139 ACACCAATTCCTCCAGCAGATTTGCTAATGATAGCACACTCTTTTAAAGTCTCATATATG 25198 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || || ||||||||||| ||||| | ||| || || ||| Sbjct 25199 CCTTCAATACTATCATCTTTCATGCACACAAGGAAGCAACTA 25240 Score = 105 bits (116), Expect = 1e-17 Identities = 119/157 (76%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 ||||||||||||||| || || || ||||| | || |||||| ||| ||||||| Sbjct 24558 CTCTCTTTCATATTGGGTGTACAATTTCTCAAAATTGTCACCCCAACAATCTGCCAAACC 24617 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTT-AACCCGTTTCATAA 76610 ||| | ||||| ||||| | ||||||||| || |||| | | || ||| | || ||| | Sbjct 24618 TGGAGACTCATTAGGACAAAACAATGACCATTCTCCAT-TGCTTTGAACTCTTTCCATGA 24676 Query 76611 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647 |||||||||| | ||| |||||| ||| ||||| || Sbjct 24677 AGAGATCAGGAACCCAAAGAGCATAAAACAGATCACG 24713 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 75740 ACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATT 75799 ||||| ||| |||||||||| ||||||||||| | | ||||||||||| | ||| Sbjct 22817 ACTCTACGACTGTAAATATTGGAAGTATATGGTTCAAAGCACTCATTGTTTCCAAGAATC 22876 Query 75800 TGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTT 75859 || ||| ||||||||||||||||| || | | | |||||| |||| | || Sbjct 22877 TGGCTAGTGGAAGCAGTCGGCATAGGAGCTATAAGAAGTGAATTTCTAGTACCA--TTTT 22934 Query 75860 CTGATTTTATCT--TTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGA 75917 ||| | |||| | ||| ||||||||||| ||||||| ||| ||| |||| | Sbjct 22935 TGGATATCATCTCCCTAAGAGCATTCCAATCCCACCGATCTGAGGGTGTCACACCCCACA 22994 Query 75918 GATCGTATTGTAGAATTCC 75936 || || |||||||| Sbjct 22995 TGTCTGGCTGAAGAATTCC 23013 >seq12080 Length=19512 Score = 113 bits (124), Expect = 6e-20 Identities = 370/575 (64%), Gaps = 0/575 (0%) Strand=Plus/Minus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || || ||||| || || || ||||| |||| || || ||||| || || || | | Sbjct 8544 CACGCGAAATCGCAGTGGAGACCTTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTTAAC 8485 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 || ||||||| || |||||||| ||||||||||| || ||| ||| || ||||| Sbjct 8484 CCGGGCATTAACCCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAA 8425 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATC 46809 |||||||| || ||||| |||| || ||||| || | | | | ||| Sbjct 8424 ATGCCTTCGACGCAAGCGAAGGCGATGAGCCTCTCCGCGAACGATTCTCCGCCGTCGATC 8365 Query 46810 CACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 46869 |||| | ||||| || ||||| ||| || ||||| | || || || || | || Sbjct 8364 CACCGCAGGGCCCACTCGGCCTTCTTCGCCACGCAAGGAACGGTCTCCATCGCGTGGAAC 8305 Query 46870 AGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCT 46929 || ||| || || | || || | ||| || || | || ||||| |||||||| Sbjct 8304 AGCCGGTTCTTCTCGGCCGAGTCCTTGATATAGGTCTCGAGCAAGAGACTGTACATTTCG 8245 Query 46930 GAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGT 46989 || || ||||| || || || ||||| || || || ||| | || || | || ||| Sbjct 8244 GAGTGGATGTTCTCGATCGCAATCTGGAAGCCATAGAAAGCGCGAGCCTCCGAAACCTGG 8185 Query 46990 ACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAA 47049 ||||| | || | | | || |||||| || || || || || || || Sbjct 8184 ACCTCCTTCATGAACCTCCCCGCCAGATTCTCCAAAACGATGCCGTCGGAGGCGGCGAAG 8125 Query 47050 AATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTG 47109 || || | || || | || || | | || || || || || | ||||| | Sbjct 8124 AAGGCGAGCACGTGAGTGATGAAGTGCCTCTCGTCATCGGTTAGGTTTTCCCAGTGACGT 8065 Query 47110 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATAC 47169 | || || | ||| || || || || |||||||| || ||||| || || || ||| Sbjct 8064 ACGTCGCCGGAGAGATCGACCTCCTCGGCGGTCCAGAACGAGGCCTCGGCCTTCTTGTAC 8005 Query 47170 ATATTCCATATATCACGATATTGGATCGGAAAAAT 47204 || | |||||| || | || || || ||||| || Sbjct 8004 ATCTCCCATATCTCCGGGTACTGAATTGGAAACAT 7970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712576542577920