Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq5990 619 2e-172 seq40156 508 7e-139 seq5685 167 3e-36 seq9596 158 2e-33 seq6232 143 3e-29 seq4408 91.5 2e-13 >seq5990 Length=34798 Score = 619 bits (686), Expect = 2e-172 Identities = 740/999 (74%), Gaps = 4/999 (0%) Strand=Plus/Plus Query 183187 TGGGAATCCTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTT 183246 |||| | |||||| ||||||| ||||||| | | |||| || || | || |||||| Sbjct 10004 TGGGGTTACTTCTGTAAATGGATAACCAGCATTGAAAACCATCTTTACATTGGATGGTTT 10063 Query 183247 GGCACACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGT 183305 || ||||||| || || | ||| | ||||| |||| || || |||| ||| | Sbjct 10064 GGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTGCTTTCAT 10122 Query 183306 CGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTA 183365 ||| ||||||| ||||| || || || || || ||||| ||| |||| || || | || Sbjct 10123 TGCTACTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTA 10182 Query 183366 TGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTT 183425 ||||| || || || |||||||| || ||||| |||| || || || ||||||| Sbjct 10183 CGGAAATAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTTCACTT 10242 Query 183426 CTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCA 183485 || || || |||||||| | || | ||||| ||| | || || || |||||||| | Sbjct 10243 TTACCCAATATGGGAAGCTGTTTCCGTTGATGAATGGTTATACAATGGCGGTCCTTATAA 10302 Query 183486 ACTCGTAGTCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATT 183545 || | || | |||||| | |||| || || || ||||||| |||||||||| | Sbjct 10303 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGAGTGGGAACT 10362 Query 183546 GTCTTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGC 183605 || |||||| |||||||| |||||||| |||||| ||| || || ||||||| Sbjct 10363 TAGTTTCCGTCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGA 10422 Query 183606 TGCAACCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCC 183665 |||||| ||||| ||| || | ||||| | |||||||| ||| ||| |||||||| Sbjct 10423 TGCAACTGCTGTTTTCTTGATATATCCCATTGGTCAAGGAAGCTTTTCTGACGGTATGCC 10482 Query 183666 CCTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCT 183725 || || || ||| || || |||| ||| |||| ||||| || |||||||||||||| Sbjct 10483 TCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCT 10542 Query 183726 GATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGC 183785 |||||||| || |||||| | ||||| |||||||| |||| ||||| || |||||||| Sbjct 10543 TATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGACGGTTCCCTATTCAGTGC 10602 Query 183786 AATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACTGAGTCTGAGTCAC 183844 ||||| |||| |||| |||| || | | | || | |||||||| || ||| || Sbjct 10603 TATGCATGGTTGCTTGGTAACTT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTG 10661 Query 183845 AGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATG 183904 ||| | ||||||| ||||||||||| ||||| || || || || || |||||||||| Sbjct 10662 CTAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATG 10721 Query 183905 GATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACT 183964 | || ||||| || |||| ||||| |||||| || ||||||||||||||| | || | Sbjct 10722 GTTATTTTGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATT 10781 Query 183965 TCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTA 184024 ||||||| || |||||||| || || || |||||||| |||||| | ||| | ||||||| Sbjct 10782 TCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTA 10841 Query 184025 TGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTG 184084 |||| || ||| | |||||||| || |||||||| || | ||||| ||||||||| || Sbjct 10842 TGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCATG 10901 Query 184085 TCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACG 184144 | | || |||||||| | || | || |||||| ||||| |||||||| ||||| | Sbjct 10902 TAATTAATACCTGGGCTAATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATG 10961 Query 184145 AGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCTG 184183 | ||||||||||| || |||||||| ||| | ||| ||| Sbjct 10962 AACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 11000 >seq40156 Length=57058 Score = 508 bits (562), Expect = 7e-139 Identities = 721/1006 (72%), Gaps = 6/1006 (1%) Strand=Plus/Plus Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030 ||||||||||| | | ||||| || || ||||| || ||||| || || | || | Sbjct 5376 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCT 5435 Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090 |||| ||||||| | || | || || ||| |||| || ||||| ||||| || | Sbjct 5436 TTCCTTGTGCTTATTTCGCGTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 5495 Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGG-TGCTAATTTTCTCACGGCAGCA 186149 ||||||| || || |||||| ||| || | || || ||| | || | | || || ||| Sbjct 5496 GGTATACACATGGATTGGCGAGTTCCTATTTGGAAGGCTGCAACTTCT-TAACCGCGGCA 5554 Query 186150 GTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 186209 || || ||||||||| | | | | || ||| | | |||| |||||||| || | Sbjct 5555 GTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGGTCCAGAAGCA 5614 Query 186210 CAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCAC 186269 ||||||||| | | || |||| ||| | || || || |||| |||||| || |||||| Sbjct 5615 CAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCAC 5674 Query 186270 GGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCG-TCTCGTAGG 186328 || || || | || |||||||||||| | || || |||||| | ||| ||| | Sbjct 5675 GGCGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAA 5734 Query 186329 TATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATT 186388 | | || || || ||||| || || || |||| ||| || ||||| |||||| |||||| Sbjct 5735 T-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATT 5793 Query 186389 CCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGC 186448 ||| || || || || || ||||| |||||||| || ||| ||||| |||||||| Sbjct 5794 CCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTCGCAGC 5853 Query 186449 AATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCA 186508 || ||| ||||| | | || ||||||| || || || ||||| ||||| ||||| || Sbjct 5854 TATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCA 5913 Query 186509 CATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTAC 186568 |||||||| || || ||| | | || | ||| || || | || || ||||||| ||| Sbjct 5914 TATGATGGGGGTTGCGGGTGTATTGGGCGCTGCCCTTCTATGCGCTATTCATGGTGCTAC 5973 Query 186569 TGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATAC 186628 |||||||||||| | | ||||||||| || ||||| |||||| || || | | Sbjct 5974 CGTAGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCCGTGCTTTTAACCC 6033 Query 186629 GACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTT 186688 || |||| |||||||| ||||| |||||||| || ||| | || ||||| || ||||| Sbjct 6034 AACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTT 6093 Query 186689 CGGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTAT 186748 || |||| ||| |||||| |||||| | |||||||| ||| | ||||| || || | Sbjct 6094 TGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 6153 Query 186749 GGGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTT-GCTCTTAACCTTCGTGCTTATG 186807 ||| | |||| | | |||| | || | | ||| ||||| ||||| || || |||| Sbjct 6154 CGGTTTATGGATGAGTGCTCTTGG-AGTAGTCGGCTTGGCTCTGAACCTACGCGCCTATG 6212 Query 186808 ACTTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCA 186867 |||| || |||||| | | ||||| || |||||||| || ||||||||||| |||| Sbjct 6213 ACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCA 6272 Query 186868 AGAATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATG 186927 | ||||| || || |||||||| | ||||| |||||||| | ||||| || |||| Sbjct 6273 AAAATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATG 6332 Query 186928 AAAACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973 ||||| || |||| ||||| || || | || | || |||||||| Sbjct 6333 AAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 6378 >seq5685 Length=160749 Score = 167 bits (184), Expect = 3e-36 Identities = 179/237 (76%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 183947 ATTCTCGTTCTCTTCACTTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTG 184006 ||||||||||| | || ||||||||| |||||||| | || || || ||||| || | Sbjct 78493 ATTCTCGTTCTTTACATTTCTTCCTTATGGCTTGGCCTATAGTAGGTATTTGGTTCACCG 78552 Query 184007 CTCTTGGTGTTAGCACTATGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCATCA 184066 || | ||| | | ||||||||| || ||| | |||||||| || |||||||| ||| | Sbjct 78553 CTTTAGGTATCAACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAG 78612 Query 184067 TTGATGGTCAAGGTCGTGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTG 184126 ||||| |||||||| |||| | || |||| || || || | || |||||| |||| Sbjct 78613 TTGATAGTCAAGGTTGTGTAATTAATACCTAGGTTGATATTATTAATCGTGCTAACCTTG 78672 Query 184127 GCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCTG 184183 | | |||||| |||| || ||||||||||| || |||||||| ||| | ||| ||| Sbjct 78673 GTACGGAAGTTATGCGTGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 78729 >seq9596 Length=34882 Score = 158 bits (174), Expect = 2e-33 Identities = 205/281 (73%), Gaps = 2/281 (1%) Strand=Plus/Plus Query 186694 TTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTATGGGTC 186753 |||| ||| |||||| |||||| | |||||||| ||| | ||||| || || | ||| Sbjct 5359 TTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTT 5418 Query 186754 TTTGGACCTCTTCCATTGGCATTATTGGTCTTG-CTCTTAACCTTCGTGCTTATGACTTT 186812 | |||| | | |||| | || | | |||| |||| ||||| || || |||||||| Sbjct 5419 TATGGATGAGTGCTCTTGG-AGTAGTCGACTTGGCTCTGAACCTACGCGCCTATGACTTC 5477 Query 186813 GTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGAAT 186872 || |||||| | | ||||| || |||||||| || ||||||||||| ||||| ||| Sbjct 5478 GTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCAAAAAT 5537 Query 186873 ATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGAAAAC 186932 || || || |||||||| | ||||| |||||||| | ||||| || ||||||||| Sbjct 5538 ATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAAC 5597 Query 186933 TTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973 || |||| ||||| || || | || | || ||| |||| Sbjct 5598 CTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACACTCT 5638 >seq6232 Length=104065 Score = 143 bits (158), Expect = 3e-29 Identities = 236/338 (70%), Gaps = 2/338 (1%) Strand=Plus/Minus Query 183195 CTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACT 183254 |||||| | | ||| ||||||||| | ||||| || || | || ||||||||| | Sbjct 82895 CTTCTGTAACTAGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGCGTTTT 82836 Query 183255 GATGATTCCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTC 183313 |||||| || || | ||| | | ||| |||| || || |||| ||| | ||||||| Sbjct 82835 GATGATCCCTACCTTATTGACCGTAACT-TCTGTATTTATTATTGCTTTCATTGCTGCTC 82777 Query 183314 CTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACA 183373 |||| ||||| || || || || || ||||| ||| |||| || || | || ||||| | Sbjct 82776 CTCCGGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAATA 82717 Query 183374 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCA 183433 | || || |||||||| || ||||| |||| || || || | ||||| || || | Sbjct 82716 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAA 82657 Query 183434 TCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAG 183493 | |||||||| | || | ||||| ||| | || || | ||||||||| | || | | Sbjct 82656 TATGGGAAGCTGGTTCCGTTGATGAATGGTTATACAATGATGGTCCTTATGAGCTAATTG 82597 Query 183494 TCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGT 183531 | | |||||| | |||| || || || |||||| Sbjct 82596 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGT 82559 >seq4408 Length=147402 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 170989 CTGAAGATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGT 171048 |||| ||| || || || ||| | ||||| | |||||| |||| || ||||| | Sbjct 127738 CTGATGATGCTTACATCCTAGATTCAGCTGAGAATGCAGGAGTTGAGCTGCCTTATTCAT 127797 Query 171049 GTCGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAAT 171108 | | ||||| ||||| || |||||||||||||| || | || || || || || |||| Sbjct 127798 GCAGGGCTGGGGCTTGCTCTACCTGTGCTGGGAAGATGGTGACAGGCTCAGTAGACCAAT 127857 Query 171109 CCGATCAATCTTTCCTTGATGATGATCAGATTGAATCAGGTTTCATTCTGACCTGCGTCT 171168 | ||| || ||||||||||| |||| || | |||||| | ||||| || ||| Sbjct 127858 CTGATGGTTCATTCCTTGATGAAAATCAAATGAAGGAAGGTTTTGTGCTGACTTGTGTCG 127917 Query 171169 CATATCCTAC 171178 | || || || Sbjct 127918 CGTACCCAAC 127927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621758151762720