Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq5990 603 1e-167 seq40156 571 6e-158 seq5685 136 4e-27 seq13284 95.1 1e-14 seq4685 91.5 2e-13 seq9248 89.7 6e-13 >seq5990 Length=34798 Score = 603 bits (668), Expect = 1e-167 Identities = 731/990 (74%), Gaps = 4/990 (0%) Strand=Plus/Plus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 |||||||| ||| |||| | || || | | | || | || ||||| || || || Sbjct 10013 TTCTGTAAATGGATAACCAGCATTGAAAACCATCTTTACATTGGATGGTTTGGTGTTTTG 10072 Query 163988 ATGATTCCCTGCCTGCTGG-CAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGCTC 164045 ||||| |||| ||| | | | || ||| | ||| || || || || ||||| | | ||| Sbjct 10073 ATGAT-CCCTACCTTATTGACCGCAACTTC-TGTATTTATTATTGCTTTCATTGCTACTC 10130 Query 164046 CTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 164105 |||| ||||| || ||||| || || ||||| || |||| || || | || ||||| | Sbjct 10131 CTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAATA 10190 Query 164106 ACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCA 164165 | || || |||||||| |||| ||| ||||| ||||| ||| | ||||| ||||| | Sbjct 10191 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTTCACTTTTACCCAA 10250 Query 164166 TCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTG 164225 | |||||||| | | || |||||| | ||||| || ||||||| | || ||| Sbjct 10251 TATGGGAAGCTGTTTCCGTTGATGAATGGTTATACAATGGCGGTCCTTATAAGCTAATTG 10310 Query 164226 TGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACC 164285 | | |||||| | |||| | | ||| ||||||| ||||||||||||| || || Sbjct 10311 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGAGTGGGAACTTAGTTTCC 10370 Query 164286 GTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTG 164345 |||| |||||||| ||||||||| || ||||| || ||||| || |||| || | || Sbjct 10371 GTCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGATGCAACTG 10430 Query 164346 CAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCA 164405 | || ||| || | ||||| | |||||||| || ||||| | |||||||| || | Sbjct 10431 CTGTTTTCTTGATATATCCCATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAA 10490 Query 164406 TCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACC 164465 | ||||| || ||||||| |||| | || ||||||||||||||||||||||| ||||||| Sbjct 10491 TTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 10550 Query 164466 CCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACG 164525 | || || ||| | || ||||| ||||| || | |||||| || |||||||| ||||| | Sbjct 10551 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGACGGTTCCCTATTCAGTGCTATGCATG 10610 Query 164526 GTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATG 164585 ||| |||| |||||| || | | || ||||| |||||||| || ||| | | Sbjct 10611 GTTGCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAG 10670 Query 164586 GTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTG 164645 |||||| || ||||| || |||||||| || || ||||| || ||||| ||||| |||| Sbjct 10671 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTG 10730 Query 164646 GTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCG 164705 | || ||||||||||||| ||| |||||||| || ||||| | || |||||||| | Sbjct 10731 GCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAG 10790 Query 164706 CAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCA 164765 | || |||||||| || ||||||||||| |||||| | || | ||||| ||||| |||| Sbjct 10791 CGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCA 10850 Query 164766 ACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACA 164825 || | || |||||||| |||||||| || | | ||| |||| |||| ||| | || | Sbjct 10851 ACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCATGTAATTAATA 10910 Query 164826 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATG 164885 ||||||| | || | || |||||| || || |||||||| ||||| || ||||||| Sbjct 10911 CCTGGGCTAATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 10970 Query 164886 CTCACAACTTCCCTCTCGACCTTGCTGCTG 164915 |||| || |||||||| ||| | ||| ||| Sbjct 10971 CTCATAATTTCCCTCTAGACTTAGCTTCTG 11000 >seq40156 Length=57058 Score = 571 bits (632), Expect = 6e-158 Identities = 725/992 (73%), Gaps = 4/992 (0%) Strand=Plus/Plus Query 165180 AGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 165239 || ||||||||||||||||| || ||||| || || | || ||||| ||||||| | Sbjct 5393 AGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCTTATTTC 5452 Query 165240 GCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTT 165299 || | || |||||| |||| || || || || || || |||||||| || ||| | Sbjct 5453 GCGTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACACATGGATTG 5512 Query 165300 GCGAGTTCCTATCTTG-AGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGA 165358 |||||||||||| | | ||| ||| ||||| | || ||||||||||||||||| || | Sbjct 5513 GCGAGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCGGCAGTTTCTACTCCTGCTAA 5571 Query 165359 CGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCG 165418 | | | || ||| | || | ||||||||||| || | ||||| || || | || Sbjct 5572 TAGTTTAGCACACTCTTTGTTGTTACTATGGGGTCCAGAAGCACAAGGAGATTTTACTCG 5631 Query 165419 CTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTAT 165478 ||||| ||| | || || || ||||||||||| || |||||||| || || | ||| || Sbjct 5632 TTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGGCGCTTTCGGACTAAT 5691 Query 165479 AGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA-CTTATCGGTATTCGTCCTTACAATG 165537 |||||||||| | || || |||||||| || ||| || || | | || ||||| |||| Sbjct 5692 AGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATG 5750 Query 165538 CTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGG 165597 | || || ||||||| ||| |||||||| || ||| ||| || || || ||||| || | Sbjct 5751 CAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCGCTAG 5810 Query 165598 GACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGC 165657 | || || |||||||| || || || || |||||||| || || |||||| | | Sbjct 5811 GTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTCGCAGCTATATTTCGATTCATCC 5870 Query 165658 TCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGCAG 165717 |||| |||||||||| ||||| ||||| |||| || ||||| |||||||| || || | Sbjct 5871 TCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGGGTTGCGG 5930 Query 165718 GTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGT 165777 || | || |||| || | || | || |||||||||| ||| ||||| |||||||| | Sbjct 5931 GTGTATTGGGCGCTGCCCTTCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTAT 5990 Query 165778 ATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAA 165837 |||||||||||| ||||| || ||| || ||| | ||||| | || |||| Sbjct 5991 TTGAAGATGGTGATGGCGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCGGAAGAAA 6050 Query 165838 CTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCA 165897 ||||||| |||||||| |||||||| || ||||| || || ||||| ||||||| || Sbjct 6051 CTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCA 6110 Query 165898 ATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTT 165957 |||| |||||| | || ||||||||| | ||||| || || | || | |||| ||| Sbjct 6111 ATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTG 6170 Query 165958 CTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGA 166017 || |||| | | || | || || || || || || ||||| || || |||||||| | Sbjct 6171 CTCTTGGAGTAGTCGGCTTGGCTCTGAACCTACGCGCCTATGACTTCGTTTCTCAGGAAA 6230 Query 166018 TTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAATG 166077 | | || || || ||||| || ||||| |||||||| || ||||| || || | |||| Sbjct 6231 TCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCAAAAATATTCTTTTAAATG 6290 Query 166078 AAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCCCTG 166137 |||| | ||||| ||| |||| || ||| || |||||||| ||| || | ||||||| Sbjct 6291 AAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTG 6350 Query 166138 AAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 | || || | || | || ||||| |||||| Sbjct 6351 AGGAGGTTCTACCCCGTGGAAACGCTCTTTAA 6382 >seq5685 Length=160749 Score = 136 bits (150), Expect = 4e-27 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 164681 TCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCT 164740 || ||||| | || |||||||| || |||||| | || ||||| ||||| || ||| Sbjct 78495 TCTCGTTCTTTACATTTCTTCCTTATGGCTTGGCCTATAGTAGGTATTTGGTTCACCGCT 78554 Query 164741 CTGGGCGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATC 164800 | || | | ||| ||||| |||||| | || |||||||| |||||||| ||| | | Sbjct 78555 TTAGGTATCAACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTT 78614 Query 164801 GATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGC 164860 ||| |||| ||| |||| | || |||| || || || | || |||||| || || Sbjct 78615 GATAGTCAAGGTTGTGTAATTAATACCTAGGTTGATATTATTAATCGTGCTAACCTTGGT 78674 Query 164861 ATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCTG 164915 | |||||| |||| || ||||||||||| || |||||||| ||| | ||| ||| Sbjct 78675 ACGGAAGTTATGCGTGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 78729 >seq13284 Length=8732 Score = 95.1 bits (104), Expect = 1e-14 Identities = 171/246 (70%), Gaps = 3/246 (1%) Strand=Plus/Minus Query 165329 TCTTA-CTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTAT 165387 ||||| | ||||||||||||||||| | | | | | || ||| | || | |||| Sbjct 2579 TCTTAACCGCGGCAGTTTCTACTCCTACTAATAGTTTAGCACACTCTTTGTTGTTACTAT 2520 Query 165388 GGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTT 165447 ||||||| | | |||| || | || | ||| ||| | || | || ||||||| Sbjct 2519 GGGGTCCAAAAGCATAAGGAGATCGTACTCGTTAGTGTCAATTAGGCAGTCTGTGGACTT 2460 Query 165448 TTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGG 165507 |||| || ||||| | || || ||| |||||||||||| | || || |||||||| | Sbjct 2459 TTGTTGCTCTCCATGACGCTTTCAAACTAATAGGTTTCATGTTACGTCAATTTGAACTTG 2400 Query 165508 CACGA-CTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTA 165566 | | | || || | | || ||||| ||||| || || |||| || ||| |||||||| Sbjct 2399 CTCAATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTTTGCTCCAATTGCTGTT 2341 Query 165567 TTCGTT 165572 || ||| Sbjct 2340 TTTGTT 2335 >seq4685 Length=19895 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 164369 GGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACTACATG 164428 ||||||| ||| ||| ||| |||||||| || || ||||| || ||||||| | || Sbjct 6887 GGTCAAGAAAGTTTTTCTAATGGTATGCCTCTTGGAATTTCTGGTACTTTCAACTTCGTG 6828 Query 164429 TTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCATATG 164476 | || ||||||| ||||||||||||||| |||||||| || || ||| Sbjct 6827 ATTGTATTCCAGGTTGAGCACAACATCCTTATGCACCCATTTCACATG 6780 >seq9248 Length=16338 Score = 89.7 bits (98), Expect = 6e-13 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 165384 CTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGG 165443 ||||||||||| || | |||| || || | || ||||| ||| || | || ||| Sbjct 802 CTATGGGGTCCAGAAGCGTAAGGAGATTTTACTCGTTGGTGTCAATCAGGCAGTCTGTGG 743 Query 165444 ACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAA 165503 |||||||| || ||||||| || || ||| |||||||||||| | | || ||| || Sbjct 742 ACTTTTGTTGCTCTCCACGACGCTTTCAGACTAATAGGTTTCATGTTACATCAATTTAAA 683 Query 165504 CTGGCACGA-CTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGC 165562 || || | | || || | | | ||||| ||||| ||||| |||| || ||| ||||| Sbjct 682 CTTGCTCAATCTGTTCAAT-TGTGACCTTATAATGCAATTGCATTCTATGCTCCAATTGC 624 Query 165563 TGT 165565 ||| Sbjct 623 TGT 621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557374485373920