Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq5990 574 6e-159 seq40156 553 2e-152 seq9596 185 1e-41 seq5685 149 7e-31 seq6232 147 3e-30 seq388 91.5 2e-13 >seq5990 Length=34798 Score = 574 bits (636), Expect = 6e-159 Identities = 720/988 (73%), Gaps = 0/988 (0%) Strand=Plus/Plus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 |||||||| ||| ||||| || ||| |||| ||| || | || ||||| || || || Sbjct 10013 TTCTGTAAATGGATAACCAGCATTGAAAACCATCTTTACATTGGATGGTTTGGTGTTTTG 10072 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 |||||||| | | || | ||||| || || || || || ||||| | | |||| Sbjct 10073 ATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGCTTTCATTGCTACTCCT 10132 Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531 || ||||| || || || || || ||||| ||| |||| ||||| | || || || || Sbjct 10133 CCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAATAAT 10192 Query 169532 ATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATC 169591 || || |||||||| || | || |||| || || ||| ||||||| || || || Sbjct 10193 ATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTTCACTTTTACCCAATA 10252 Query 169592 TGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTC 169651 |||||||| | | ||||||||||| ||||| || ||||||| | || |||| Sbjct 10253 TGGGAAGCTGTTTCCGTTGATGAATGGTTATACAATGGCGGTCCTTATAAGCTAATTGTT 10312 Query 169652 TTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATCGT 169711 | |||||| | | || | | ||| ||||||| |||||||||| | | ||| Sbjct 10313 CTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGAGTGGGAACTTAGTTTCCGT 10372 Query 169712 CTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCT 169771 || ||||||||||||||||| |||||| || || ||||| ||||| | || | ||| Sbjct 10373 CTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGATGCAACTGCT 10432 Query 169772 GTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATC 169831 |||||| || | || || |||| ||||| || ||||||| ||||||||| || || Sbjct 10433 GTTTTCTTGATATATCCCATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATT 10492 Query 169832 TCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCCC 169891 || || || || |||| |||| | || ||||| ||||||||||||||||| |||||||| Sbjct 10493 TCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCA 10552 Query 169892 TTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGT 169951 || |||||| | ||||| || || || || | || || || || || || ||||| ||| Sbjct 10553 TTTCACATGTTAGGTGTAGCTGGTGTATTCGACGGTTCCCTATTCAGTGCTATGCATGGT 10612 Query 169952 AGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTATGGT 170011 || | || ||||| ||| | || | |||||||| || || || || ||| | ||| Sbjct 10613 TGCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGGT 10672 Query 170012 TACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCGGT 170071 |||| ||||||||||| ||||| || || || ||||| || ||||| ||||| || || Sbjct 10673 TACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGC 10732 Query 170072 CGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCA 170131 || |||| |||||||| ||| |||||||| || ||||| | || |||||||| || Sbjct 10733 CGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGCG 10792 Query 170132 GCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAAC 170191 || |||||||| || || ||||||||||| ||| | ||| || ||| ||||| |||||| Sbjct 10793 GCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAAC 10852 Query 170192 CTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACC 170251 | || |||||||| |||||||| || | | ||| |||| |||| ||| | || ||| Sbjct 10853 TTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCATGTAATTAATACC 10912 Query 170252 TGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCT 170311 ||||| | || | || |||||| ||||| |||||||| ||||| || ||||||||| Sbjct 10913 TGGGCTAATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 10972 Query 170312 CACAACTTCCCTCTCGACCTCGCTGCTG 170339 || || |||||||| ||| | ||| ||| Sbjct 10973 CATAATTTCCCTCTAGACTTAGCTTCTG 11000 >seq40156 Length=57058 Score = 553 bits (612), Expect = 2e-152 Identities = 734/1011 (73%), Gaps = 6/1011 (1%) Strand=Plus/Plus Query 170605 TGGATGACTGGCTTAAACGTGATCGGTTTGTATTTGTGGGCTGGTCTGGACTTCTTCTTT 170664 ||||||||||| | | || || || || ||||| || ||||| || || | || | Sbjct 5376 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCT 5435 Query 170665 TTCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGACATTTGTTACAAGTT 170724 |||| ||||||| | || | || || ||| |||| || || || ||||| || | Sbjct 5436 TTCCTTGTGCTTATTTCGCGTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 5495 Query 170725 GGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGG-TGCTAATTTCCTTACAGCGGCT 170783 |||| || || ||| | || ||||| || | ||||| ||| || ||| | || ||||| Sbjct 5496 GGTATACACATGGATTGGCGAGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCGGCA 5554 Query 170784 GTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 170843 || || || |||||| || | | | || ||| | | |||| |||||||| || | Sbjct 5555 GTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGGTCCAGAAGCA 5614 Query 170844 CAGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCAC 170903 || || ||||| || |||| ||| | || || || |||| |||||| || |||||| Sbjct 5615 CAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCAC 5674 Query 170904 GGAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCG-TCTCGTAGG 170962 || || || | || |||||||||||| | || || |||||| | ||| ||| || Sbjct 5675 GGCGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCT-GTTCA 5733 Query 170963 GATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTT 171022 | |||| || ||||||||||| ||||||| ||| || ||||| ||||| || || Sbjct 5734 ATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATT 5793 Query 171023 CCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGC 171082 ||| || ||||| || || ||||| |||||||||| || || ||||| || ||||| Sbjct 5794 CCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTCGCAGC 5853 Query 171083 AATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCA 171142 || || || ||| | ||||| | ||||| || || || |||||| |||| |||||||| Sbjct 5854 TATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCA 5913 Query 171143 TATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTAC 171202 ||||||||| ||||| ||| | | |||| ||| | || | || |||||||||| ||| Sbjct 5914 TATGATGGGGGTTGCGGGTGTATTGGGCGCTGCCCTTCTATGCGCTATTCATGGTGCTAC 5973 Query 171203 AGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACAC 171262 ||||| |||||||| | ||||||||||||| ||||| || || || ||| || | Sbjct 5974 CGTAGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCCGTGCTTTTAACCC 6033 Query 171263 GACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTT 171322 ||||| | |||||| || ||||| |||||||| ||||| || || ||||| || || || Sbjct 6034 AACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTT 6093 Query 171323 TGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCAT 171382 ||| | || || |||||| |||||||| |||||||||||| | ||||| || || | Sbjct 6094 TGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 6153 Query 171383 GGGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTT-GCTCTTAATCTTAGGGCTTATG 171441 ||| | ||| | ||| ||| ||| || | | ||| ||||| || || | || |||| Sbjct 6154 CGGTTTATGGATGAGTGCTCT-TGGAGTAGTCGGCTTGGCTCTGAACCTACGCGCCTATG 6212 Query 171442 ATTTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCA 171501 | ||||| |||||| || | ||||| |||||||| || || ||||||||||| |||| Sbjct 6213 ACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCA 6272 Query 171502 AGAACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGTAGACCAACCACATG 171561 | || || || || |||||||| ||||||| |||||||| | ||| || || |||| Sbjct 6273 AAAATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATG 6332 Query 171562 AAAACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATGCACTTTGAT 171612 ||||| || | ||||| ||||| |||||||| ||||| || || |||| || Sbjct 6333 AAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAAT 6383 >seq9596 Length=34882 Score = 185 bits (204), Expect = 1e-41 Identities = 208/276 (75%), Gaps = 2/276 (1%) Strand=Plus/Plus Query 171338 CAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCAG 171397 |||||| |||||||| |||||||||||| | ||||| || || | ||| | ||| | || Sbjct 5369 CAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAG 5428 Query 171398 TAGTCTGGGGATTATTGGTCTT-GCTCTTAATCTTAGGGCTTATGATTTCGTAAGTCAGG 171456 | ||| ||| || | | ||| ||||| || || | || ||||| ||||| ||||| Sbjct 5429 TGCTCT-TGGAGTAGTCGACTTGGCTCTGAACCTACGCGCCTATGACTTCGTTTCTCAGG 5487 Query 171457 AGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGA 171516 | || | ||||| |||||||| || || ||||||||||| ||||| || || || || | Sbjct 5488 AAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCAAAAATATTCTTTTAA 5547 Query 171517 ATGAAGGTCTTCGTGCATGGATGGCACCAGTAGACCAACCACATGAAAACTTTGTGTTCC 171576 ||||||| ||||||| |||||||| | ||| || || ||||||||| || | |||| Sbjct 5548 ATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCC 5607 Query 171577 CAGAGGAAGTTCTACCTCGTGGCAATGCACTTTGAT 171612 | ||||| |||||||| ||||| || | |||| || Sbjct 5608 CTGAGGAGGTTCTACCCCGTGGAAACACTCTTTAAT 5643 >seq5685 Length=160749 Score = 149 bits (164), Expect = 7e-31 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 170105 TCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTTGTTGGCATCTGGTTCACCGCT 170164 || ||||| | || |||||||| || |||||| | || || || |||||||||||| Sbjct 78495 TCTCGTTCTTTACATTTCTTCCTTATGGCTTGGCCTATAGTAGGTATTTGGTTCACCGCT 78554 Query 170165 CTTGGTGTCTCCACGATGGCGTTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATC 170224 | ||| || ||| ||||| |||||| | || |||||||| |||||||| ||| | | Sbjct 78555 TTAGGTATCAACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTT 78614 Query 170225 GATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGC 170284 ||| |||| ||| |||| | || |||| || || || | || |||||| ||||| Sbjct 78615 GATAGTCAAGGTTGTGTAATTAATACCTAGGTTGATATTATTAATCGTGCTAACCTTGGT 78674 Query 170285 ATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTCGCTGCTG 170339 | |||||| |||| || ||||||||||| || |||||||| ||| | ||| ||| Sbjct 78675 ACGGAAGTTATGCGTGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 78729 >seq6232 Length=104065 Score = 147 bits (162), Expect = 3e-30 Identities = 218/309 (71%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 |||||||||| | ||||| |||||| |||||||| || | || ||||| ||||| || Sbjct 82894 TTCTGTAACTAGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGCGTTTTG 82835 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 |||||||| | | || | | ||| || || || || || ||||| | |||||| Sbjct 82834 ATGATCCCTACCTTATTGACCGTAACTTCTGTATTTATTATTGCTTTCATTGCTGCTCCT 82775 Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531 || ||||| || || || || || ||||| ||| |||| ||||| | || || || || Sbjct 82774 CCGGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAATAAT 82715 Query 169532 ATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATC 169591 || || |||||||| || | || |||| || || ||| | ||||| || || || Sbjct 82714 ATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATA 82655 Query 169592 TGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTC 169651 |||||||| | | ||||||||||| ||||| | |||||||| | || |||| Sbjct 82654 TGGGAAGCTGGTTCCGTTGATGAATGGTTATACAATGATGGTCCTTATGAGCTAATTGTT 82595 Query 169652 TTCCACTTC 169660 | |||||| Sbjct 82594 CTACACTTC 82586 >seq388 Length=54843 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 171135 CCATTTCATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCAT 171194 ||||||||||||||||| ||||| ||| | | || | ||| | || | ||| | |||| Sbjct 28338 CCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGTTGCTCTTCTATGTGCTACTCAT 28279 Query 171195 GGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGG 171252 |||| || |||||||||||||| |||||||| |||| | ||||| || |||| || Sbjct 28278 GGTGCAACTGTAGAGAATACTTTAGTTGAAGATGATGATAATGCAAATACATTTAGGG 28221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591901146013120