Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq2790 96.9 3e-15 seq2241 87.8 1e-12 >seq2790 Length=17423 Score = 96.9 bits (106), Expect = 3e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| || |||||||| |||| ||| |||||| ||||||||||| || || | || Sbjct 3765 ATGGCGCTTCCTCCATGCCACATGTTTGCTCAGTTCTACGTTGCAAATGGAGAGCTCTCG 3706 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 || ||| | || ||| | || | |||||||| ||||| ||||| || ||||||||| Sbjct 3705 TGTCAAATGTATCAGCGCTCAGCTGATATGGGTCTTGGTGTACCTTTTAACATTGCTTCT 3646 Query 19092 TATGCACTTCTTACCTACATAGTAGCGCATGTT 19124 || | |||||||| | ||| |||| || ||| Sbjct 3645 TACTCCCTTCTTACATGCATTCTAGCTCACGTT 3613 >seq2241 Length=19256 Score = 87.8 bits (96), Expect = 1e-12 Identities = 174/255 (68%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 18870 CAAGGAATCGATCAGCT-GCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCG 18928 |||||| | |||||||| ||| | ||| || || | || || | || || || || Sbjct 2078 CAAGGATTTGATCAGCTCGCAGA-TGTAATCGACAAGATCAAGAACAATCCTGATGATCG 2020 Query 18929 ACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATG 18988 || || || ||||| ||||||| || ||| || | |||| || ||||| || Sbjct 2019 GCGTATCATATTATCGGCTTGGAACCCTTCTGATCTCAAGCTGATGGCGCTTCCTCCGTG 1960 Query 18989 TCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAG 19048 |||| ||| ||||| ||||| || | || || | || || || | || ||| | Sbjct 1959 CCACATGTTTGCACAGTTCTACGTGGCGGAAGGGGAGCTCTCGTGTCAGATGTATCAGCG 1900 Query 19049 ATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTA 19108 || | ||||||||||||||| || ||||| ||||||||| || | ||||| || | Sbjct 1899 TTCAGCGGATATGGGCCTTGGTGTGCCGTTTAACATTGCTTCCTACTCTCTTCTGACTTG 1840 Query 19109 CATAGTAGCGCATGT 19123 ||| |||| ||||| Sbjct 1839 CATGCTAGCTCATGT 1825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399188822804940