Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq2241 122 6e-23
seq41676 89.7 4e-13
seq2790 84.2 2e-11
>seq2241
Length=19256
Score = 122 bits (134), Expect = 6e-23
Identities = 120/155 (77%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 101701 ATAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATG 101760
||| | ||||||||| || || ||||||||| || ||||| || |||| | |||||
Sbjct 1770 ATACACGTGAGCATCCCCAATGACATGGATAAAATCACCAGGAACGAGATCACACACATG 1829
Query 101761 AGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCAT 101820
||| | ||||||||| | |||||| ||| |||||||||||| ||||| || | |||||
Sbjct 1830 AGCTAGCATGCAAGTCAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCCCAT 1889
Query 101821 ATCAGCTGATCTTTGATACAGTTGACAGGAAAGCT 101855
||| ||||| | ||||||| ||||| || ||||
Sbjct 1890 ATCCGCTGAACGCTGATACATCTGACACGAGAGCT 1924
>seq41676
Length=800
Score = 89.7 bits (98), Expect = 4e-13
Identities = 150/216 (69%), Gaps = 1/216 (0%)
Strand=Plus/Plus
Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815
|||||||| | ||||| || | ||| || || |||||||||||| || || || |
Sbjct 533 ACATGAGCGAGGATGCATGTAAGAAGTGAGTATGAAGCAATGTTAAACGGTACACCAAGA 592
Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAAT 101875
| ||||||||||| | ||||||| |||||| |||| || ||||| ||||||||
Sbjct 593 CTGATATCAGCTGAGCACTGATACATTTGACACGAAAACTCTCCATTTGCAACATAAAAC 652
Query 101876 TGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCA 101935
||| || | || ||||| || | |||| || ||| ||| |||||||||
Sbjct 653 TGAGGAAACATGTGGCAAGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCAAGCT 712
Query 101936 CACATTAACATCCTTCTATCTGTAGGGTTTGTTTTT 101971
|||||| |||| | ||| | || ||||||||
Sbjct 713 GACATTATTATCCGGCGATC-ATCAGGATTGTTTTT 747
>seq2790
Length=17423
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815
|| ||||| | ||||| || | ||| || || |||||||||||| || || || |
Sbjct 3614 ACGTGAGCTAGAATGCATGTAAGAAGGGAGTAAGAAGCAATGTTAAAAGGTACACCAAGA 3673
Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAAT 101875
|||||||||||||| | ||||||| |||||| || |||| ||||| || || ||
Sbjct 3674 CCCATATCAGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCATTTGCAACGTAGAAC 3733
Query 101876 TGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCA 101935
||| || | || || || || | | |||| || ||| ||| |||||||||
Sbjct 3734 TGAGCAAACATGTGGCATGGAGGAAGCGCCATCAGCTTAAGGTCAGAAGGATTCCAAGCC 3793
Query 101936 CACATTAACATCCTTCTATCTGTAGGGTT 101964
|||||| |||| | ||| ||||||
Sbjct 3794 GACATTATAATCCGCCGATCGTCAGGGTT 3822
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 360966201251732
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |