Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq2241 122 6e-23 seq41676 89.7 4e-13 seq2790 84.2 2e-11 >seq2241 Length=19256 Score = 122 bits (134), Expect = 6e-23 Identities = 120/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 101701 ATAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATG 101760 ||| | ||||||||| || || ||||||||| || ||||| || |||| | ||||| Sbjct 1770 ATACACGTGAGCATCCCCAATGACATGGATAAAATCACCAGGAACGAGATCACACACATG 1829 Query 101761 AGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCAT 101820 ||| | ||||||||| | |||||| ||| |||||||||||| ||||| || | ||||| Sbjct 1830 AGCTAGCATGCAAGTCAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCCCAT 1889 Query 101821 ATCAGCTGATCTTTGATACAGTTGACAGGAAAGCT 101855 ||| ||||| | ||||||| ||||| || |||| Sbjct 1890 ATCCGCTGAACGCTGATACATCTGACACGAGAGCT 1924 >seq41676 Length=800 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/216 (69%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815 |||||||| | ||||| || | ||| || || |||||||||||| || || || | Sbjct 533 ACATGAGCGAGGATGCATGTAAGAAGTGAGTATGAAGCAATGTTAAACGGTACACCAAGA 592 Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAAT 101875 | ||||||||||| | ||||||| |||||| |||| || ||||| |||||||| Sbjct 593 CTGATATCAGCTGAGCACTGATACATTTGACACGAAAACTCTCCATTTGCAACATAAAAC 652 Query 101876 TGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCA 101935 ||| || | || ||||| || | |||| || ||| ||| ||||||||| Sbjct 653 TGAGGAAACATGTGGCAAGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCAAGCT 712 Query 101936 CACATTAACATCCTTCTATCTGTAGGGTTTGTTTTT 101971 |||||| |||| | ||| | || |||||||| Sbjct 713 GACATTATTATCCGGCGATC-ATCAGGATTGTTTTT 747 >seq2790 Length=17423 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815 || ||||| | ||||| || | ||| || || |||||||||||| || || || | Sbjct 3614 ACGTGAGCTAGAATGCATGTAAGAAGGGAGTAAGAAGCAATGTTAAAAGGTACACCAAGA 3673 Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAAT 101875 |||||||||||||| | ||||||| |||||| || |||| ||||| || || || Sbjct 3674 CCCATATCAGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCATTTGCAACGTAGAAC 3733 Query 101876 TGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCA 101935 ||| || | || || || || | | |||| || ||| ||| ||||||||| Sbjct 3734 TGAGCAAACATGTGGCATGGAGGAAGCGCCATCAGCTTAAGGTCAGAAGGATTCCAAGCC 3793 Query 101936 CACATTAACATCCTTCTATCTGTAGGGTT 101964 |||||| |||| | ||| |||||| Sbjct 3794 GACATTATAATCCGCCGATCGTCAGGGTT 3822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360966201251732