Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq2241 120 4e-22 >seq2241 Length=19256 Score = 120 bits (132), Expect = 4e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCG 145743 || ||| |||||| | | || ||||| || ||||| | ||| ||||| || || || Sbjct 1750 AGAGGCCTCACGTGAGTTCGATACACGTGAGCATCCCCAATGACATGGATAAAATCACCA 1809 Query 145744 GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTG 145803 || |||| | | || || | |||| | ||||| || |||||| || ||||| Sbjct 1810 GGAACGAGATCACACACATGAGCTAGCATGCAAGTCAGAAGAGAGTAGGAAGCAATGTTA 1869 Query 145804 AAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCG 145863 || ||||| || || ||||| ||| | || ||||| |||| ||| || ||||||||||| Sbjct 1870 AACGGCACACCAAGGCCCATATCCGCTGAACGCTGATACATCTGACACGAGAGCTCCCCT 1929 Query 145864 CCCGCCACGTAGAACTG-GCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 |||||||||||||||| ||| | | |||||| || || || ||||| Sbjct 1930 TCCGCCACGTAGAACTGTGCA-AACATGTGGCACGGAGGAAGCGCCAT 1976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589599339357280