Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq2241 113 3e-20 >seq2241 Length=19256 Score = 113 bits (124), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 97032 AAGCTGCTCTGTGAGAG-CATCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGT 97090 ||| |||||| ||||| | ||| |||| | ||| | ||||||||| || | | Sbjct 1737 AAGTTGCTCTTGGAGAGGCCTCAC-GTGAGTTCGATACACGTGAGCATCCCCAATGACAT 1795 Query 97091 GAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAAT 97150 | ||||| || |||||||| | |||| ||||| || | ||| ||||| | ||||| | Sbjct 1796 GGATAAAATCACCAGGAACGAGATCACACACATGAGCTAGCATGCAAGTCAGAAGAGAGT 1855 Query 97151 AGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGAC 97210 || |||||||||||| ||||| || || |||||||| ||||| | ||||| | ||||| Sbjct 1856 AGGAAGCAATGTTAAACGGCACACCAAGGCCCATATCCGCTGAACGCTGATACATCTGAC 1915 Query 97211 AGGAAAGCTTTCCATCACACACATAAAACTG 97241 | || |||| || || ||| || ||||| Sbjct 1916 ACGAGAGCTCCCCTTCCGCCACGTAGAACTG 1946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346510414733240