Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1703 98.7 1e-15 seq4396 87.8 3e-12 seq13321 86.0 9e-12 >seq1703 Length=21771 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || | ||||| || || || || ||||| ||| | ||| | || ||| Sbjct 18822 ATGCAGATCTTCGTCAAGACTCTTACCGGAAAGACTATCACTTTGGAGGTGGAGAGCTC- 18764 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| || | || || || |||||||| ||||| || || || ||||| Sbjct 18763 TGATACAATCGACAACGTCAAGGCTAAGATACAAGATAAGGAAGGGATCCCTCCGGATCA 18704 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| ||||| || || |||||| | | || | | |||||||| Sbjct 18703 GCAGAGGCTGATCTTTGCGGGAAAGCAGTTGGAGGATGGGAGGACTCTTGCTGATTATAA 18644 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || || || || ||| ||||| | ||| | | | || |||||||| Sbjct 18643 TATACAGAAGGAGTCGACTCTGCATCTCGTTCTCAGGCTTCGTGGTGGTAT 18593 >seq4396 Length=13502 Score = 87.8 bits (96), Expect = 3e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 124668 ATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAA 124727 || || || ||||| || | |||||| |||| || || | |||||| || ||||||||| Sbjct 3 ATCTTCGCTGGAAAGCAGCTCGAGGATGGTCGCACTTTGGCAGATTACAACATTCAAAAA 62 Query 124728 GAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||| | |||||||| |||||| |||| |||||||| Sbjct 63 GAGTCGACTCTTCATTTGGTGTTACGTCTACGTGGTGGTAT 103 >seq13321 Length=5581 Score = 86.0 bits (94), Expect = 9e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 124626 ATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAA 124685 || ||| |||| ||||| || || || | || || ||||| ||||| |||||||| Sbjct 3544 ATACAATATAAGGAAGGAATCCCTAGCGACAAGCAGAGACTTATCTTTGCCGGAAAACAG 3603 Query 124686 TTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTG 124745 | |||||| || || || || ||||| |||||||||||||| |||||| | || ||| Sbjct 3604 ATGGAGGATCACCGTACGTTGGATGATTACAATATTCAAAAAGATTCAACTCTACACTTG 3663 Query 124746 GTTTT 124750 ||||| Sbjct 3664 GTTTT 3668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754844722777600