Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1703 98.7 1e-15 >seq1703 Length=21771 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| || | || | ||| | ||| || || || |||||||||||| | | Sbjct 18596 CCACCACGAAGCCTGAGAACGAGATGCAGAGTCGACTCCTTCTGTATATTATAATCAGCA 18655 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| || | ||| || || || ||||| ||||| |||| || |||||||||||||| Sbjct 18656 AGAGTCCTCCCATCCTCCAACTGCTTTCCCGCAAAGATCAGCCTCTGCTGATCCGGAGGG 18715 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| |||||||| Sbjct 18716 ATCCCTTCCTTATCTTG 18732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742924775613440