Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq2790 93.3 3e-14 >seq2790 Length=17423 Score = 93.3 bits (102), Expect = 3e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 20401 ATGGCTTTGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCTAATAATGAATTGTC 20459 ||||| | |||||||| || ||| | ||| || || |||||||| ||| || | || Sbjct 3765 ATGGCGCTTCCTCCATGCCACATGTT-TGCTCAGTTCTACGTTGCAAATGGAGAGCTCTC 3707 Query 20460 GTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAG 20519 ||||||||||||||| || || ||||||||||| || ||||| ||||| || ||||| Sbjct 3706 GTGTCAAATGTATCAGCGCTCAGCTGATATGGGTCTTGGTGTACCTTTTAACATTGCTTC 3647 Query 20520 TTATGCGCTGCTTAC 20534 ||| | || ||||| Sbjct 3646 TTACTCCCTTCTTAC 3632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398869075259740