Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq27908 84.2 5e-11 >seq27908 Length=1802 Score = 84.2 bits (92), Expect = 5e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 ||||| || || || | ||||| |||||||| || |||| || || ||| | ||| | Sbjct 1238 GATTTTGAATATGACTACTTTGGATTCAAAACTCTTGAGAGGTCATACCTCTTGAAAGTC 1179 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 ||||||| |||| ||| | |||||||||| | ||| | || |||| ||||||||| Sbjct 1178 CATGGCAAAGTCGTTGAAAGGCCTCAGCACATGCTCATGAGGGTCTCTGTTGGGATTCAC 1119 Query 248929 AAGGATGACATAGA 248942 || || ||||| || Sbjct 1118 AAAGAAGACATTGA 1105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1072875840965376